Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.
To use, just follow these steps:
- Fork the repo and create a new file in the
file_requests/directory.- The file should contain a header line, followed by a list of web links to the files you want to analyze. See the example file provided.
- Links need to be formatted as follows:
<base_url><sample ID>_[12].<file_extension>(1 representing the forward strand and 2 the reverse strand of paired-end data). If your data is not accessible in this way, or unpublished, it's not a problem - just create an issue and describe what you need.
- Create a PR with your changes. We will review and merge it as soon as possible.
- After merging, the data will be uploaded to Galaxy and processed.
- Documentation for the project
- Scripts for our analysis bot
- planemo and bioblend tools powering the automation of the analyses.