Refine predictive model and significance #186
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| # This action will test the code coverage of all R files that contains examples and | |
| # Unit tests. This will be triggered using `workflow_run` after a successful run of | |
| # the Lint action. | |
| # | |
| # This file must live on `main` branch, and any version in other branches will not | |
| # be triggered. This is a "feature" of GH-actions. The workaround for working with | |
| # the right branch is using the 'github.event.workflow_run.head_branch' on action | |
| # 'actions/checkout'. Thanks to Potherca https://stackoverflow.com/a/65081720/2195337 | |
| name: Covr | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| - develop | |
| workflow_dispatch: | |
| repository_dispatch: | |
| concurrency: | |
| group: coverage | |
| cancel-in-progress: true | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| if: ${{ contains(github.event.head_commit.message, 'coverage') }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RENV_PATHS_ROOT: ~/.local/share/renv | |
| CODECOV_TOKEN: "4676dbf0-8296-4fd8-9542-a476503b0118" | |
| steps: | |
| - name: Checking out shallow repository | |
| uses: actions/checkout@v2 | |
| with: | |
| ref: ${{ github.event.workflow_run.head_branch }} | |
| - run: git branch | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: Install other dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libgit2-dev libharfbuzz-dev libcurl4-openssl-dev \ | |
| libfribidi-dev libzmq3-dev libmagick++-dev | |
| - name: Setting up R installation | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Setting up pandoc and pandoc-citeproc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Cache R packages | |
| uses: actions/cache@v2.1.4 | |
| id: cache-packages | |
| with: | |
| path: ${{ env.RENV_PATHS_ROOT }} | |
| key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }}-targets-v2 | |
| restore-keys: | | |
| ${{ runner.os }}-renv- | |
| - name: Install dependencies | |
| run: | | |
| if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv") | |
| Sys.unsetenv("GITHUB_PAT") | |
| renv::restore() | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| run: covr::codecov() | |
| shell: Rscript {0} |