updated Rakefile and gemspec

fstrozzi · Mar 22, 2011 · 4b4ca4e · 4b4ca4e
1 parent 5b12445
commit 4b4ca4e
Show file tree

Hide file tree

Showing 2 changed files with 82 additions and 5 deletions.
diff --git a/Rakefile b/Rakefile
@@ -19,6 +19,9 @@ Jeweler::Tasks.new do |gem|
   gem.description = %Q{Ruby binding for BWA mapping software, built using Ruby-FFI library}
   gem.email = "francesco.strozzi@gmail.com"
   gem.authors = ["Francesco Strozzi"]
+  gem.extensions = "ext/mkrf_conf.rb"
+  gem.files += Dir['lib/**/*'] + Dir['ext/**/*'] 
+
   # Include your dependencies below. Runtime dependencies are required when using your gem,
   # and development dependencies are only needed for development (ie running rake tasks, tests, etc)
   #  gem.add_runtime_dependency 'jabber4r', '> 0.1'

diff --git a/bio-bwa.gemspec b/bio-bwa.gemspec
@@ -9,9 +9,10 @@ Gem::Specification.new do |s|
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Francesco Strozzi"]
-  s.date = %q{2011-02-04}
+  s.date = %q{2011-03-22}
   s.description = %q{Ruby binding for BWA mapping software, built using Ruby-FFI library}
   s.email = %q{francesco.strozzi@gmail.com}
+  s.extensions = ["ext/mkrf_conf.rb"]
   s.extra_rdoc_files = [
     "LICENSE.txt",
     "README.rdoc"
@@ -25,11 +26,84 @@ Gem::Specification.new do |s|
     "Rakefile",
     "VERSION",
     "bio-bwa.gemspec",
+    "doc/Bio.html",
+    "doc/Bio/BWA.html",
+    "doc/Bio/BWA/Library.html",
+    "doc/_index.html",
+    "doc/class_list.html",
+    "doc/css/common.css",
+    "doc/css/full_list.css",
+    "doc/css/style.css",
+    "doc/file.LICENSE.html",
+    "doc/file.README.html",
+    "doc/file_list.html",
+    "doc/frames.html",
+    "doc/index.html",
+    "doc/js/app.js",
+    "doc/js/full_list.js",
+    "doc/js/jquery.js",
+    "doc/method_list.html",
+    "doc/top-level-namespace.html",
+    "ext/COPYING",
+    "ext/ChangeLog",
+    "ext/Makefile",
+    "ext/NEWS",
+    "ext/README",
+    "ext/Rakefile",
+    "ext/bamlite.c",
+    "ext/bamlite.h",
+    "ext/bntseq.c",
+    "ext/bntseq.h",
+    "ext/bwa.1",
+    "ext/bwape.c",
+    "ext/bwase.c",
+    "ext/bwase.h",
+    "ext/bwaseqio.c",
+    "ext/bwt.c",
+    "ext/bwt.h",
+    "ext/bwt_gen/Makefile",
+    "ext/bwt_gen/QSufSort.c",
+    "ext/bwt_gen/QSufSort.h",
+    "ext/bwt_gen/bwt_gen.c",
+    "ext/bwt_gen/bwt_gen.h",
+    "ext/bwt_gen/libbwtgen.a",
+    "ext/bwt_lite.c",
+    "ext/bwt_lite.h",
+    "ext/bwtaln.c",
+    "ext/bwtaln.h",
+    "ext/bwtgap.c",
+    "ext/bwtgap.h",
+    "ext/bwtindex.c",
+    "ext/bwtio.c",
+    "ext/bwtmisc.c",
+    "ext/bwtsw2.h",
+    "ext/bwtsw2_aux.c",
+    "ext/bwtsw2_chain.c",
+    "ext/bwtsw2_core.c",
+    "ext/bwtsw2_main.c",
+    "ext/cs2nt.c",
+    "ext/is.c",
+    "ext/khash.h",
+    "ext/kseq.h",
+    "ext/ksort.h",
+    "ext/kstring.c",
+    "ext/kstring.h",
+    "ext/kvec.h",
+    "ext/libbwa.dylib",
+    "ext/main.c",
+    "ext/main.h",
+    "ext/mkrf_conf.rb",
+    "ext/qualfa2fq.pl",
+    "ext/simple_dp.c",
+    "ext/simpletest.c",
+    "ext/solid2fastq.pl",
+    "ext/stdaln.c",
+    "ext/stdaln.h",
+    "ext/utils.c",
+    "ext/utils.h",
     "lib/bio-bwa.rb",
     "lib/bio/bwa.rb",
-    "lib/bio/ext/libbwa.dylib",
-    "lib/bio/ext/libbwa.so",
-    "lib/bio/library.rb",
+    "lib/bio/bwa/library.rb",
     "test/data/testdata.fa",
     "test/data/testdata.long.fa",
     "test/data/testdata.short.fa",
@@ -42,7 +116,7 @@ Gem::Specification.new do |s|
   s.homepage = %q{http://github.com/fstrozzi/bioruby-bwa}
   s.licenses = ["MIT/GPLv3"]
   s.require_paths = ["lib"]
-  s.rubygems_version = %q{1.5.0}
+  s.rubygems_version = %q{1.6.2}
   s.summary = %q{Ruby binding for BWA mapping software}
   s.test_files = [
     "test/helper.rb",