Bumped version to 0.5.0 and updated dependencies.

fulcrumgenomics · Feb 11, 2018 · f08a4c6 · f08a4c6
1 parent 2c6e682
commit f08a4c6
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Showing 6 changed files with 8 additions and 10 deletions.
diff --git a/build.sbt b/build.sbt
@@ -122,8 +122,8 @@ lazy val root = Project(id="fgbio", base=file("."))
       "org.scala-lang"            %  "scala-reflect"  % scalaVersion.value,
       "org.scala-lang"            %  "scala-compiler" % scalaVersion.value,
       "org.scala-lang.modules"    %% "scala-xml"      % "1.0.6",
-      "com.fulcrumgenomics"       %% "commons"        % "0.4.0-619783e-SNAPSHOT",
-      "com.fulcrumgenomics"       %% "sopt"           % "0.3.1",
+      "com.fulcrumgenomics"       %% "commons"        % "0.4.0",
+      "com.fulcrumgenomics"       %% "sopt"           % "0.4.0",
       "com.github.samtools"       %  "htsjdk"         % "2.13.0" excludeAll(htsjdkExcludes: _*),
       "net.jafama"                %  "jafama"         % "2.1.0",
       "org.apache.commons"        %  "commons-math3"  % "3.6.1",

diff --git a/project/build.properties b/project/build.properties
@@ -1 +1 @@
-sbt.version=1.0.4
+sbt.version=1.1.1
diff --git a/project/plugins.sbt b/project/plugins.sbt
@@ -4,6 +4,6 @@ addSbtPlugin("com.typesafe.sbt"  % "sbt-git"       % "0.9.3")
 addSbtPlugin("com.github.gseitz" % "sbt-release"   % "1.0.6")
 addSbtPlugin("com.eed3si9n"      % "sbt-assembly"  % "0.14.6")
 addSbtPlugin("org.scoverage"     % "sbt-scoverage" % "1.5.1")
-addSbtPlugin("org.xerial.sbt"    % "sbt-sonatype"  % "2.0")
+addSbtPlugin("org.xerial.sbt"    % "sbt-sonatype"  % "2.2")
 addSbtPlugin("com.jsuereth"      % "sbt-pgp"       % "1.1.0")
 addSbtPlugin("net.virtual-void"  % "sbt-dependency-graph" % "0.9.0")
diff --git a/run_metrics_doclet.sh b/run_metrics_doclet.sh
@@ -28,10 +28,12 @@
 # Simple shell script to generate metrics documentation with scaladoc
 ###############################################################################
 
+set -euo pipefail
+
 # Uncomment the following line to turn on debugging when running scaladoc
 # JAVA_OPTS="-agentlib:jdwp=transport=dt_socket,server=y,suspend=y,address=7777"
 
 sources=$(find src/main/scala -name \*.scala)
-cp=$(sbt -Dsbt.log.noformat=true "export runtime:fullClasspath" 2> /dev/null | fgrep -v '[info]')
+cp=$(sbt -Dsbt.log.noformat=true "export runtime:fullClasspath" 2> /dev/null | tail -n 1)
 
 scaladoc -toolcp $cp -d target -doc-generator com.fulcrumgenomics.internal.FgMetricsDoclet $sources
diff --git a/sonatype.sbt b/sonatype.sbt
@@ -7,10 +7,6 @@ pomExtra in Global := {
         <url>http://www.opensource.org/licenses/mit-license.html</url>
       </license>
     </licenses>
-    <scm>
-      <url>git@github.com:fulcrumgenomics/fgbio</url>
-      <connection>scm:git:git@github.com:fulcrumgenomics/fgbio.git</connection>
-    </scm>
     <developers>
       <developer>
         <id>nh13</id>

diff --git a/version.sbt b/version.sbt
@@ -1 +1 @@
-version in ThisBuild := "0.5.0-SNAPSHOT"
+version in ThisBuild := "0.5.0"