Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
As it turns out
gzip
files with multiple gzip blocks (e.g. bgzipped files) the current choice of flate2 decoding will only decode the first block as currently written in fgoxide.Switching to
MultiGzDecoder
fixes this and will allow this to work on large bgzipped files.See documentation below:
https://docs.rs/flate2/latest/flate2/read/struct.GzDecoder.html
https://docs.rs/flate2/latest/flate2/read/struct.MultiGzDecoder.html