Releases: ga4gh/vrs-python
Releases · ga4gh/vrs-python
2.0.0-a6
What's Changed
- Test enref / deref behavior by @ahwagner in #357
- docs: update docstring for VrsObjectIdentifierIs by @korikuzma in #355
- simplify normalization implementation by @ahwagner in #358
- feat!: parameterize normalize in translator by @korikuzma in #361
- Add support for mito
m.
in translate_from by @larrybabb in #362 - chore: remove submodules from package data by @korikuzma in #371
- chore: move VariationNormalizerRESTDataProxy to notebooks by @korikuzma in #374
- feat: refactor hgvsTools and support
c.
translation by @larrybabb in #366 - chore: remove unused code by @korikuzma in #373
- refactor: simplify validating reference sequence by @korikuzma in #375
- docs: update + reorganize readme by @korikuzma in #376
- chore!: remove localizer by @korikuzma in #379
- cicd: fix release when multiple branches track same tag by @korikuzma in #384
- feat: add inclusion of "NT" prefixed refseq accessions to hgvs tools by @larrybabb in #383
New Contributors
- @larrybabb made their first contribution in #362
Full Changelog: 2.0.0-a5...2.0.0-a6
2.0.0-a5
2.0.0-a4
2.0.0-a3
What's Changed
- cicd: delete stale action by @korikuzma in #316
- cicd: update branch name for release by @korikuzma in #319
- chore: update submodules by @korikuzma in #320
- docs: update uta docker image in readme by @korikuzma in #323
- docs: change order in readme (#294) by @korikuzma in #321
- feat: add intro to terra notebook by @korikuzma in #318
- docs: include more information on postgresql in readme by @korikuzma in #322
- docs: update vrs-python and vrs version correspondences by @korikuzma in #324
- docs: update default branches for VRS-Python / VRS by @korikuzma in #326
- chore: remove unused files by @jsstevenson in #329
- fix: use start/end constraints for
digest
andrefgetAccession
fields by @jsstevenson in #328 - cicd: remove tox by @jsstevenson in #331
- chore: remove more unused stuff by @jsstevenson in #332
- Issue #334: Normalization by @ahwagner in #336
- fix: add rle_seq_limit to AlleleTranslator by @korikuzma in #346
- feat: add param to VCFAnnotator to optionally require validation checks by @korikuzma in #345
- cicd: update branch name in release.yml by @korikuzma in #348
Full Changelog: 2.0.0-a2...2.0.0-a3
2.0.0-a2
What's Changed
- cicd: update release.yml to use trusted publisher by @korikuzma in #271
- build: properly pin pydantic v2 major version by @korikuzma in #273
- fix: gnomad_re should accept all nucleotide characters for ref/alt by @korikuzma in #278
- cicd: use single quotes in if condition for branch name by @korikuzma in #282
- fix: ensure extra fields present in jsonschema by @jsstevenson in #284
- build(deps): remove jsonschema dependency by @jsstevenson in #285
- docs: Update README for running notebooks (#286) by @korikuzma in #288
- VCFAnnotator updates to skip REF alleles and emit correct INFO field definitions by @ehclark in #299
- Output VRS_Error INFO field for VCF sites where VRS computation fails by @ehclark in #301
- Output "." instead of blank string in VCF INFO fields by @ehclark in #302
- Add memoization to data proxy methods to improve performance by @ehclark in #304
- Enhancements to improve VRS computation performance by @ehclark in #310
New Contributors
Full Changelog: 2.0.0-a1...2.0.0-a2
0.8.5
What's Changed
- build: support python >= 3.8 by @korikuzma in #202
- docs: update pip installation + fix typos (#207) by @korikuzma in #209
- fix: gnomad_re should accept all nucleotide characters for ref/alt by @korikuzma in #277
- cicd: update release.yml to use trusted publisher by @korikuzma in #279
- cicd: use single quotes in if condition for branch name by @korikuzma in #280
Full Changelog: 0.8.4...0.8.5
0.8.4
What's Changed
- fix: VCF Annotator VRS_Allele_Ids renamed to VRS_Allele_IDs by @korikuzma in #186
Full Changelog: 0.8.3...0.8.4
VRS Manuscript (v0.7.0)
The v0.7.0 release of vrs-python supports VRS v1.2.0 as described in the VRS preprint.