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Also update data managers #78

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merged 16 commits into from Mar 13, 2018

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rhpvorderman
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@rhpvorderman rhpvorderman commented Mar 6, 2018

Hi. This solves #69 .
Have not run extensive testing yet, but will do that tomorrow.
It seems to run for now. Curious to see your feedback.

One of the side effects is that get-tool-list now also uses get_galaxy_connection method. a nice step towards unifying ephemeris.

EDIT:
Changes:

  • shed-tools update now also updates data managers.
  • With get-tool-list you can now also get all installed data managers, provided you have admin access to the galaxy.

@jmchilton
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Very nice - 👍 from me. Thanks a bunch @rhpvorderman !

@@ -152,9 +134,42 @@ def _parser():
"Use this if you would like to use the list to update all the tools in"
"your galaxy instance using shed-install."
)
parser.add_argument("-get_dms", "--get_data_managers",
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Imho the single dashes are meant for single letter. I would skip the short version here.

@galaxyproject galaxyproject deleted a comment Mar 13, 2018
@rhpvorderman rhpvorderman merged commit 861a98a into galaxyproject:master Mar 13, 2018
@rhpvorderman rhpvorderman deleted the get_data_managers branch March 13, 2018 08:44
@rhpvorderman
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@bgruening @jmchilton Thanks for reviewing!

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3 participants