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Pipfile
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[[source]]
url = "https://wheels.galaxyproject.org/simple"
verify_ssl = true
name = "galaxy"
[[source]]
url = "https://pypi.python.org/simple"
verify_ssl = true
name = "pypi"
[dev-packages]
gunicorn = "*"
lxml = "!=4.2.2"
mock = "*"
NoseHTML = "*"
pygithub3 = {version = "*", markers = "python_version < '3'"}
pytest = "*"
pytest-html = "*"
pytest-pythonpath = "*"
recommonmark = "*"
selenium = "*"
Sphinx = "<1.7" # Docs do not build with sphinx 1.7 for some reason, can't find issue.
sphinx_rtd_theme = "*"
testfixtures = "*"
twill = {version = "==0.9.1", markers = "python_version < '3'"}
watchdog = "*"
[packages]
numpy = "*"
bx-python = "*"
MarkupSafe = "*"
PyYAML = "*"
SQLAlchemy = "*"
SQLAlchemy-Utils = "*"
Mercurial = {version = "<=3.7.3", markers = "python_version < '3'"}
nodeenv = "*"
pycryptodome = "*"
uWSGI = "*"
pysam = "==0.14.1"
bdbag = "*"
bleach = "*"
"bz2file" = {version = "*", markers = "python_version < '3.3'"}
ipaddress = {version = "*", markers = "python_version < '3.3'"}
boltons = "*"
Paste = "*"
docutils = "*"
Routes = "*"
WebOb = "*"
Mako = "*"
Babel = "*"
Beaker = "*"
dictobj = "*"
nose = "*"
Parsley = "*"
six = "*"
Whoosh = "*"
galaxy_sequence_utils = "*"
"h5py" = "!=2.7.0, !=2.7.1"
pykwalify = "*"
"Cheetah3" = "*"
requests = "*"
bioblend = "*"
boto = "*"
kombu = "*"
psutil = "*"
pulsar-galaxy-lib = "*"
sqlalchemy-migrate = "*"
sqlparse = "*"
svgwrite = "*"
pyparsing = "*"
"Fabric3" = "*"
paramiko = "*"
python-genomespaceclient = "<2.0"
social_auth_core = {version = "==1.5.0", extras = ['openidconnect']}
cloudauthz = "<=0.2.0"
[requires]
python_version = "2.7"