/
pinned-requirements.txt
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/
pinned-requirements.txt
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# packages with C extensions
# numpy must come before bx-python when doing source installs to so bx-python
# is built properly (see #4982).
numpy==1.9.2
bx-python==0.7.3
MarkupSafe==1.0
PyYAML==3.12
SQLAlchemy==1.0.15
sqlalchemy-utils==0.32.19
mercurial==3.7.3; python_version < '3.0'
pycrypto==2.6.1
uWSGI==2.0.15
# Flexible BAM index naming is new to core pysam
pysam>=0.13
# Install python_lzo if you want to support indexed access to lzo-compressed
# locally cached maf files via bx-python
#python_lzo==1.8
# pure Python packages
bz2file==0.98; python_version < '3.3'
ipaddress==1.0.18; python_version < '3.3'
boltons==17.1.0
Paste==2.0.2
PasteDeploy==1.5.2
docutils==0.14
repoze.lru==0.6
Routes==2.4.1
WebOb==1.4.1
WebHelpers==1.3
Mako==1.0.2
pytz==2017.3
Babel==2.5.1
Beaker==1.7.0
dictobj==0.3.1
nose==1.3.7
Parsley==1.3
six==1.11.0
Whoosh==2.7.4
galaxy_sequence_utils==1.0.2
h5py==2.7.1
# pykwalify and dependencies
pykwalify==1.6.0
python-dateutil==2.5.3
docopt==0.6.2
# Cheetah and dependencies
Cheetah==2.4.4
Markdown==2.6.3
# Requests and dependencies
requests==2.18.4
certifi==2017.7.27.1
urllib3==1.22
chardet==3.0.4
idna==2.6
# BioBlend and dependencies
bioblend==0.7.0
boto==2.38.0
requests-toolbelt==0.8.0
# kombu and dependencies
kombu==3.0.30
amqp==1.4.8
anyjson==0.3.3
# Pulsar requirements
psutil==4.1.0
pulsar-galaxy-lib==0.8.0
# sqlalchemy-migrate and dependencies
sqlalchemy-migrate==0.11.0
decorator==4.0.2
Tempita==0.5.3dev
sqlparse==0.1.16
pbr==3.1.1
# svgwrite and dependencies
svgwrite==1.1.6
pyparsing==2.1.1
# Fabric and dependencies
Fabric==1.13.2
paramiko==2.2.1
ecdsa==0.13
# GenomeSpace dependencies
python-genomespaceclient==0.1.8
# OpendID Connect & OAuth2.0
oauthlib==1.0.3
pyjwkest==1.4.0
PyJWT==1.4.0
python-openid==2.2.5
requests-oauthlib==0.6.1
social_auth_core==1.5.0