/
metadata.xml
29 lines (29 loc) · 1.31 KB
/
metadata.xml
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<tool id="metadata" name="metadata" version="1.0.0">
<command>mkdir $output_copy_of_input.extra_files_path; cp $input.extra_files_path/* $output_copy_of_input.extra_files_path; echo "$input.metadata.base_name" > $output_of_input_metadata</command>
<inputs>
<param name="input" type="data" format="velvet" label="Velvet Dataset" help="Prepared by velveth."/>
</inputs>
<outputs>
<data format="txt" name="output_of_input_metadata" />
<data format="velvet" name="output_copy_of_input" />
</outputs>
<tests>
<test>
<param name="input" value="velveth_test1/output.html" ftype="velvet" >
<composite_data value="velveth_test1/Sequences" />
<composite_data value="velveth_test1/Roadmaps" />
<composite_data value="velveth_test1/Log"/>
<metadata name="base_name" value="Example Metadata" />
</param>
<!-- This ouptut tests setting input metadata above -->
<output name="output_of_input_metadata" ftype="txt">
<assert_contents>
<has_line line="Example Metadata" />
</assert_contents>
</output>
<!-- This output tests an assertion about output metadata -->
<output name="output_copy_of_input" file="velveth_test1/output.html">
<metadata name="base_name" value="velvet" />
</output>
</test>
</tests></tool>