/
pinned-requirements.txt
81 lines (69 loc) · 1.34 KB
/
pinned-requirements.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
# packages with C extensions
bx-python==0.7.3
MarkupSafe==0.23
PyYAML==3.11
SQLAlchemy==1.0.15
mercurial==3.7.3
numpy==1.9.2
pycrypto==2.6.1
uWSGI==2.0.15
# Install python_lzo if you want to support indexed access to lzo-compressed
# locally cached maf files via bx-python
#python_lzo==1.8
# pure Python packages
bz2file==0.98; python_version < '3.3'
Paste==2.0.2
PasteDeploy==1.5.2
docutils==0.12
wchartype==0.1
repoze.lru==0.6
Routes==2.4.1
WebOb==1.4.1
WebHelpers==1.3
Mako==1.0.2
pytz==2015.4
Babel==2.4.0
Beaker==1.7.0
dictobj==0.3.1
nose==1.3.7
Parsley==1.3
six==1.10.0
Whoosh==2.7.4
galaxy_sequence_utils==1.0.2
h5py==2.7.1
# pykwalify and dependencies
pykwalify==1.5.1
python-dateutil==2.5.3
docopt==0.6.2
# Cheetah and dependencies
Cheetah==2.4.4
Markdown==2.6.3
# BioBlend and dependencies
bioblend==0.7.0
boto==2.38.0
requests==2.10.0
requests-toolbelt==0.4.0
# kombu and dependencies
kombu==3.0.30
amqp==1.4.8
anyjson==0.3.3
# Pulsar requirements
psutil==4.1.0
pulsar-galaxy-lib==0.8.0
# sqlalchemy-migrate and dependencies
sqlalchemy-migrate==0.10.0
decorator==4.0.2
Tempita==0.5.3dev
sqlparse==0.1.16
pbr==1.8.0
# svgwrite and dependencies
svgwrite==1.1.6
pyparsing==2.1.1
# Fabric and dependencies
Fabric==1.13.2
paramiko==2.2.1
ecdsa==0.13
# Flexible BAM index naming
pysam==0.8.4+gx5
# GenomeSpace dependencies
python-genomespaceclient==0.1.8