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16.04_announce.rst

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April 2016 Galaxy Release (v 16.04)

Highlights

Feature1
Feature description.
Feature2
Feature description.
Feature3
Feature description.
New
% git clone -b master https://github.com/galaxyproject/galaxy.git
Update to latest stable release
% git checkout master && pull --ff-only origin master
Update to exact version
% git checkout v16.04
Upgrade
% hg pull
% hg update latest_16.04

See our wiki for additional details regarding the source code locations.

Deprecation Notices

API for history contents, index:
  • types: is no longer a valid parameter but accessible using
?q=history_content_type&qv=[dataset | dataset_collection]
  • ids: is no longer a valid url parameter but is accessible using
?q=type_id-in&qv=<e.g. dataset-abcdef123,dataset_collection-987fedcba, ...>
  • deleted and visible: are no longer parameters but are still accessible using
q=deleted&qv=[True | False]&q=visible&qv=[True | False]

Security

Due to security fixes on the Mercurial side we had to update the hg version that both Galaxy and TS depend on because the fixes have not been backported to older versions. However this has broken the TS's hg push functionality as Mercurial changed their bundle format in a non-compatible manner. Given that we deprecated the hg push API functionality back in in 15.10 we decided to disable it fully from 16.01 (retroactively).

Only Tool Sheds newer than 16.01 should be deployed form now on.

Release Notes