You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I noticed a strange thing when debugging my tool.
There is a / missing, so the directory structure gets screwed up and there is unwanted behaviour like left-over tmp directories.
Example
output files:
/tmp/tmp4NvYcRfiles/000/dataset_10.dat
/tmp/tmp4NvYcRfiles/000/dataset_11.dat
current working dir:
/tmp/tmp4NvYcR/job_working_directory/000/9
where /tmp/tmp4NvYcR/galaxy-central-master/ is the tmp Galaxy root.
tmp4NvYcRfiles should (obviously?) be tmp4NvYcR/files/
Is this a bug in Galaxy or planemo?
The text was updated successfully, but these errors were encountered:
(I'm not an official source of truth)
I've actually been using that as a feature during my test iterations--I've actually enjoyed being able to back and check the output of commands and when I have tests that fail, compare outputs. That said, you're right, it does leave an unclean /tmp/
Prevents deletion of temporary files created for/by Galaxy. Might be useful for debugging stuff (#80 (comment)) - probably would be a whole lot more useful for debugging if we also dropped a little shell script in that directory that allowed resuming Galaxy from that state.
I noticed a strange thing when debugging my tool.
There is a / missing, so the directory structure gets screwed up and there is unwanted behaviour like left-over tmp directories.
Example
output files:
/tmp/tmp4NvYcRfiles/000/dataset_10.dat
/tmp/tmp4NvYcRfiles/000/dataset_11.dat
current working dir:
/tmp/tmp4NvYcR/job_working_directory/000/9
where /tmp/tmp4NvYcR/galaxy-central-master/ is the tmp Galaxy root.
tmp4NvYcRfiles should (obviously?) be tmp4NvYcR/files/
Is this a bug in Galaxy or planemo?
The text was updated successfully, but these errors were encountered: