Skip to content
View messersc's full-sized avatar
15 followers · 61 following
  • Berlin

Achievements

Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2
BetaSend feedback

Achievements

Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2
BetaSend feedback
Block or Report

Block or report messersc

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
messersc/README.md

Hi there, I'm Clemens

I'm a data scientist with a background in computational biology and bioinformatics who likes to explore data to generate hypotheses, to gain new insights and to solve problems.

Technology

Linux Shell R Python Python MySQL Docker Git GitHub GitLab CircleCI

Currently learning

Azure

Publications

ORCID

Contributions

Project repository publication
SNAPPY: SNAPPY Nucleic Acid Processing Pipeline https://github.com/bihealth/snappy-pipeline unpublished
SCelVis: Easy Single-Cell Visualization https://github.com/bihealth/scelvis https://doi.org/10.7717/peerj.8607
DigestiFlow: from BCL to FASTQ with ease https://github.com/bihealth/digestiflow-demux https://doi.org/10.1093/bioinformatics/btz850
SigsPack: a package for cancer mutational signatures https://github.com/bihealth/SigsPack https://doi.org/10.1186/s12859-019-3043-7
HLA-MA: simple yet powerful matching of samples using HLA typing results https://github.com/bihealth/hlama https://doi.org/10.1093/bioinformatics/btx132

Pinned Loading

  1. bihealth/digestiflow-demux bihealth/digestiflow-demux Public

    🍝 Digestiflow Demultiplexing Tool

    Python 2 4

  2. progeny_domainadversarial_nn progeny_domainadversarial_nn Public

    Domain-Adaptation for Cancer Pathway Prediction

    Python

  3. bihealth/hlama bihealth/hlama Public

    Simple matching of HTS samples based on HLA typing

    Python 13 2

  4. affiliation_generator affiliation_generator Public

    Python script to generate list of affiliations for manuscripts

    Python

  5. bihealth/scelvis bihealth/scelvis Public

    🎇 SCelVis - web-based visualization of single-cell data. ➡️ ➡️ Demo ➡️➡️

    Python 21 5

  6. base_mask base_mask Public

    Python functions to check base masks and translate to bcl2fastq flavour

    Python