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planemo tool_init should wrap $input_file in double quotes #98

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merged 1 commit into from
Mar 9, 2015

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peterjc
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@peterjc peterjc commented Mar 8, 2015

I was reading the writing a tool docs for v0.6.0 https://planemo.readthedocs.org/en/latest/writing.html and noticed the command string template did not double quote the filenames:

    <command><![CDATA[
        seqtk seq -a $input1 > $output1
    ]]></command>

This untested change attempts to do that, and ought to give:

    <command><![CDATA[
        seqtk seq -a "$input1" > "$output1"
    ]]></command>

I was reading the writing a tool docs for v0.6.0 https://planemo.readthedocs.org/en/latest/writing.html and noticed the command string template did not double quote the filenames:

```
    <command><![CDATA[
        seqtk seq -a $input1 > $output1
    ]]></command>
```

This *untested* change attempts to do that.
@jmchilton
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Awesome, thanks for the fix.

jmchilton added a commit that referenced this pull request Mar 9, 2015
planemo tool_init should wrap $input_file in double quotes
@jmchilton jmchilton merged commit c811282 into galaxyproject:master Mar 9, 2015
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2 participants