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scanpy uses wildcard output collection which breaks under pulsar #3546

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Slugger70 opened this issue Mar 22, 2021 · 1 comment

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affects UseGalaxy.*

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Slugger70 commented Mar 22, 2021

Scanpy can't run on Pulsar due to it collecting it's outputs via wildcards.

Slugger70 added the affects UseGalaxy.* label

bgruening mentioned this issue

Glob/wildcard in from_work_dir outputs doesn't work galaxyproject/pulsar#239

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bgruening commented Mar 23, 2021

@Slugger70 I think we should collect them in the pulsar repo. Its not a tool-iuc issue I think. Unless we decide to recommend to not use wildcards.

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