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Merge pull request #2782 from mblue9/r2g_small_update
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Reads to counts: update tool name
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hexylena committed Sep 21, 2021
2 parents 6a4714e + 9c3348f commit 51b57e9
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Expand Up @@ -457,11 +457,11 @@ The counts for the samples are output as tabular files. Take a look at one. The

## Create count matrix

The counts files are currently in the format of one file per sample. However, it is often convenient to have a count matrix. A count matrix is a single table containing the counts for all samples, with the genes in rows and the samples in columns. The counts files are all within a collection so we can use the Galaxy **Column Join on Collection** tool to easily create a count matrix from the single counts files.
The counts files are currently in the format of one file per sample. However, it is often convenient to have a count matrix. A count matrix is a single table containing the counts for all samples, with the genes in rows and the samples in columns. The counts files are all within a collection so we can use the Galaxy **Column Join on multiple datasets** tool to easily create a count matrix from the single counts files.

> ### {% icon hands_on %} Hands-on: Create count matrix with **Column Join on Collection**
> ### {% icon hands_on %} Hands-on: Create count matrix with **Column Join on multiple datasets**
>
> **Column Join on Collection** {% icon tool %} with the following parameters:
> **Column Join on multiple datasets** {% icon tool %} with the following parameters:
> - {% icon param-collection %} *"Tabular files"*: `Counts` (output of **featureCounts** {% icon tool %})
> - {% icon param-text %} *"Identifier column"*: `1`
> - {% icon param-text %} *"Number of header lines in each input file"*: `1`
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