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Hackathon on conda packaging: September 27th and 28th #57
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Hi Bjoern, Sounds very interesting. I will follow your progress but I cant spare any time next week to participate properly. I'm moving next week to a new city |
@iracooke no problem! I will work on peptide-shaker I guess as example. Have fun moving! |
@bgruening Is the issue still open? I would like to work on it. |
@souravsingh this is awesome! The hackathon is over yes, but I can help you to get started anytime. |
The first Galaxy-P CONDA hackathon will be held on September 27th and 28th. |
ping @galaxyproteomics/developers! |
Awesome! Any thoughts about cross posting to tools-iuc? This could be a great chance for anyone that missed @bgruening's first conda intro to get looped back in. Although, I wouldn't want to hijack/detract from the Proteomics priorities. |
@blankenberg done! |
I'm in! |
Just a reminder our hackathon will start in 2 days :) Looking forward to see you all. |
Hi Bjoern Sent from my iPhone
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@iracooke !!! But I think looking at an example is in most cases enough. For example this one: https://github.com/bioconda/bioconda-recipes/tree/master/recipes/pysamstats Install minconda2: http://conda.pydata.org/miniconda.html create those two files and run: |
I will be able and happy to join 28th but not 27th (EST :) ). Do we have a packaging agenda as to which tools are prioritized? cheers,
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@bgruening I would like to join in the hackathon. Do we have a list of packages requiring a conda recipe? |
@souravsingh @glormph sounds great! @PratikDJagtap need to explain this to me ;) |
Hello Bjoern and Conda packaging hackathon participants, JJ has suggested that participants focus on their own tools and Ideally, the tools with priority 1 are those that would need to be tackled Thank you everyone for the participation! Regards, Pratik Jagtap, On Mon, Sep 26, 2016 at 6:53 AM, Björn Grüning notifications@github.com
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Where are the details for joining the hackathon? I.e. where do I go and at what time? Does Conda build everything from source? |
@chambm I have added a link to a hangout and one to a gitter chat room. I will be there as soon as I'm awake and will give guidance. We also will have a short presentation if this is necessary! |
Added a link to quick-start slides at the top. |
Let's start the Codefest in Europe! :) |
If anyone needs help please ping us! We are here to help you :) |
This was really fun for me!!! I hope you also enjoyed it! We wrote a little summary about this hackathon and I wanted to thank you all for your amazing contributions! I think we can do this again - next time with the focus on GalaxyP tools to make use of the conda packages? https://gist.github.com/bgruening/97b1fa16b92f5ab30b1e7c193b286432 Again, thanks a bunch for all your help! |
Fantastic work. Sorry I was not able to participate. Hopefully next time
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Hi GalaxyP Community,
I would like to invite you to a hackathon on the September 27th and 28th. We will package as many dependencies as possible into conda packages.
Conda is a new packaging system that Galaxy can use and that enables travis tool testing, finally! Would be great if someone can join!
We will meet tomorrow here:
https://hangouts.google.com/call/35zl5pahj5hkppxokhuxvszx24e
and on gitter here:
https://gitter.im/GalaxyProteomics/Lobby
Some slides for a Conda quick-start can be found here: https://galaxy.slides.com/bgruening/conda-quick-start/live#/
A tool list that needs help can be found here: https://docs.google.com/spreadsheets/d/1C9p_XLiLyrbMoRVKS_H582TL1I5v9FKAv2dl5VAYxjw/edit#gid=0
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