Merge pull request #2331 from cdeil/cat-data

Move catalog test data to text files
gammapy · Aug 30, 2019 · 75cd39f · 75cd39f
2 parents 09061bc + 1632546
commit 75cd39f
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Showing 26 changed files with 1,115 additions and 375 deletions.
diff --git a/Makefile b/Makefile
@@ -100,7 +100,6 @@ docs-all:
 docs-show:
 	open docs/_build/html/index.html
 
-# TODO: fix gammapy/catalog/tests/test_gammacat.py (move to ref txt file and exclude here?)
 trailing-spaces:
 	find $(PROJECT) examples docs -name "*.py" -exec perl -pi -e 's/[ \t]*$$//' {} \;
 

diff --git a/gammapy/catalog/hess.py b/gammapy/catalog/hess.py
@@ -644,6 +644,7 @@ def __init__(self, filename=None, hdu="HGPS_SOURCES"):
 
         self._table_components = Table.read(filename, hdu="HGPS_GAUSS_COMPONENTS")
         self._table_associations = Table.read(filename, hdu="HGPS_ASSOCIATIONS")
+        self._table_associations["Separation"].format = ".6f"
         self._table_identifications = Table.read(filename, hdu="HGPS_IDENTIFICATIONS")
         self._table_large_scale_component = Table.read(
             filename, hdu="HGPS_LARGE_SCALE_COMPONENT"

diff --git a/gammapy/catalog/registry.py b/gammapy/catalog/registry.py
@@ -68,8 +68,8 @@ def register(self, name, cls, args=()):
 
     def __getitem__(self, name):
         if name not in self._available_catalogs:
-            msg = 'Unknown catalog: "{}". '.format(name)
-            msg += "Available catalogs: {}".format(self.catalog_names)
+            msg = 'Unknown catalog: {!r}. '.format(name)
+            msg += "Available catalogs: {!r}".format(self.catalog_names)
             raise KeyError(msg)
 
         if name not in self._loaded_catalogs:

diff --git a/gammapy/catalog/tests/data/2hwc_j0534+220.txt b/gammapy/catalog/tests/data/2hwc_j0534+220.txt
@@ -0,0 +1,22 @@
+
+*** Basic info ***
+
+Catalog row index (zero-based) : 0
+Source name:    : 2HWC J0534+220
+
+*** Position info ***
+
+RA                   : 83.628 deg
+DEC                  : 22.024 deg
+GLON                 : 184.547 deg
+GLAT                 : -5.783 deg
+Position error       : 0.057 deg
+
+*** Spectral info ***
+
+Spectrum 0:
+Flux at 7 TeV        : 1.85e-13 +- 2.38e-15 cm-2 s-1 TeV-1
+Spectral index       : -2.580 +- 0.010
+Test radius          : 0.0 deg
+
+No second spectrum available for this source
diff --git a/gammapy/catalog/tests/data/2hwc_j0631+169.txt b/gammapy/catalog/tests/data/2hwc_j0631+169.txt
@@ -0,0 +1,26 @@
+
+*** Basic info ***
+
+Catalog row index (zero-based) : 1
+Source name:    : 2HWC J0631+169
+
+*** Position info ***
+
+RA                   : 97.998 deg
+DEC                  : 16.997 deg
+GLON                 : 195.614 deg
+GLAT                 : 3.507 deg
+Position error       : 0.114 deg
+
+*** Spectral info ***
+
+Spectrum 0:
+Flux at 7 TeV        : 6.71e-15 +- 1.47e-15 cm-2 s-1 TeV-1
+Spectral index       : -2.570 +- 0.150
+Test radius          : 0.0 deg
+
+Spectrum 1:
+Flux at 7 TeV        : 4.87e-14 +- 6.85e-15 cm-2 s-1 TeV-1
+Spectral index       : -2.230 +- 0.080
+Test radius          : 2.0 deg
+
diff --git a/gammapy/catalog/tests/data/3fgl_J0000.1+6545.txt b/gammapy/catalog/tests/data/3fgl_J0000.1+6545.txt
@@ -0,0 +1,57 @@
+
+*** Basic info ***
+
+Catalog row index (zero-based) : 0
+Source name          : 3FGL J0000.1+6545 
+Extended name        :                   
+Associations         : 
+Other names          : 2FGL J2359.6+6543c
+Class                :      
+TeVCat flag          : No TeV association
+Other flags          : Source-to-background ratio less than 10% in highest band in which TS > 25. Background is integrated over the 68%-confidence area (pi*r_682) or 1 square degree, whichever is smaller.
+
+*** Position info ***
+
+RA                   : 0.038 deg
+DEC                  : 65.752 deg
+GLON                 : 117.694 deg
+GLAT                 : 3.403 deg
+
+Semimajor (68%)      : 0.0628 deg
+Semiminor (68%)      : 0.0481 deg
+Position angle (68%) : 41.03 deg
+Semimajor (95%)      : 0.1019 deg
+Semiminor (95%)      : 0.0780 deg
+Position angle (95%) : 41.03 deg
+ROI number           : 185
+
+*** Spectral info ***
+
+Spectrum type                                 : PowerLaw        
+Detection significance (100 MeV - 300 GeV)    : 6.813
+Significance curvature                        : 3.4
+Pivot energy                                  : 1159 MeV
+Power law spectral index                      : 2.411
+Spectral index                                : 2.411 +- 0.082
+Flux Density at pivot energy                  : 1.01e-12 +- 1.49e-13 cm-2 MeV-1 s-1
+Integral flux (1 - 100 GeV)                   : 1.02e-09 +- 1.58e-10 cm-2 s-1
+Energy flux (100 MeV - 100 GeV)               : 1.36e-11 +- 2.07e-12 erg cm-2 s-1
+
+*** Spectral points ***
+
+  e_min     e_max        flux     flux_errn   flux_errp      e2dnde     e2dnde_errn   e2dnde_errp  is_ul   flux_ul     e2dnde_ul    sqrt_TS 
+   MeV       MeV     1 / (cm2 s) 1 / (cm2 s) 1 / (cm2 s) erg / (cm2 s) erg / (cm2 s) erg / (cm2 s)       1 / (cm2 s) erg / (cm2 s)          
+--------- ---------- ----------- ----------- ----------- ------------- ------------- ------------- ----- ----------- ------------- ---------
+  100.000    300.000   1.808e-08   8.395e-09   8.236e-09     4.175e-12     1.938e-12     1.902e-12 False         nan           nan 2.1687548
+  300.000   1000.000   6.941e-09   1.353e-09   1.367e-09     4.544e-12     8.856e-13     8.948e-13 False         nan           nan  5.269711
+ 1000.000   3000.000   1.237e-09   2.251e-10   2.343e-10     2.855e-12     5.198e-13     5.411e-13 False         nan           nan   6.02224
+ 3000.000  10000.000   5.781e-11   4.045e-11   4.853e-11     3.784e-13     2.648e-13     3.177e-13 False         nan           nan 1.5091934
+10000.000 100000.000   2.840e-11   1.484e-11   1.915e-11     4.317e-13     2.257e-13     2.912e-13 False         nan           nan 2.4211686
+
+*** Lightcurve info ***
+
+Lightcurve measured in the energy band: 100 MeV - 100 GeV
+
+Variability index : 40.754
+
+No peak measured for this source.
diff --git a/gammapy/catalog/tests/data/3fgl_J0001.4+2120.txt b/gammapy/catalog/tests/data/3fgl_J0001.4+2120.txt
@@ -0,0 +1,58 @@
+
+*** Basic info ***
+
+Catalog row index (zero-based) : 4
+Source name          : 3FGL J0001.4+2120 
+Extended name        :                   
+Associations         : TXS 2358+209, 3EG J2359+2041
+Other names          : 
+Class                : fsrq 
+TeVCat flag          : No TeV association
+Other flags          : None
+
+*** Position info ***
+
+RA                   : 0.361 deg
+DEC                  : 21.338 deg
+GLON                 : 107.665 deg
+GLAT                 : -40.047 deg
+
+Semimajor (68%)      : 0.1298 deg
+Semiminor (68%)      : 0.1162 deg
+Position angle (68%) : -32.55 deg
+Semimajor (95%)      : 0.2105 deg
+Semiminor (95%)      : 0.1884 deg
+Position angle (95%) : -32.55 deg
+ROI number           : 326
+
+*** Spectral info ***
+
+Spectrum type                                 : LogParabola     
+Detection significance (100 MeV - 300 GeV)    : 11.350
+Significance curvature                        : 4.4
+beta                                          : 0.5191451907157898 +- 0.15508420765399933
+Pivot energy                                  : 311 MeV
+Power law spectral index                      : 2.777
+Spectral index                                : 2.305 +- 0.180
+Flux Density at pivot energy                  : 2.52e-11 +- 2.8e-12 cm-2 MeV-1 s-1
+Integral flux (1 - 100 GeV)                   : 2.94e-10 +- 7.58e-11 cm-2 s-1
+Energy flux (100 MeV - 100 GeV)               : 8.07e-12 +- 8.38e-13 erg cm-2 s-1
+
+*** Spectral points ***
+
+  e_min     e_max        flux     flux_errn   flux_errp      e2dnde     e2dnde_errn   e2dnde_errp  is_ul   flux_ul     e2dnde_ul    sqrt_TS 
+   MeV       MeV     1 / (cm2 s) 1 / (cm2 s) 1 / (cm2 s) erg / (cm2 s) erg / (cm2 s) erg / (cm2 s)       1 / (cm2 s) erg / (cm2 s)          
+--------- ---------- ----------- ----------- ----------- ------------- ------------- ------------- ----- ----------- ------------- ---------
+  100.000    300.000   1.524e-08   2.378e-09   2.390e-09     3.773e-12     5.888e-13     5.918e-13 False         nan           nan 6.7877107
+  300.000   1000.000   3.640e-09   5.311e-10   5.450e-10     2.260e-12     3.297e-13     3.384e-13 False         nan           nan 7.5911775
+ 1000.000   3000.000   3.565e-10   9.341e-11   1.018e-10     7.153e-13     1.874e-13     2.042e-13 False         nan           nan 4.5168524
+ 3000.000  10000.000   8.414e-15         nan   1.924e-11     4.392e-17           nan     1.004e-13  True   3.849e-11     2.009e-13       0.0
+10000.000 100000.000   1.036e-14         nan   1.126e-11     9.595e-17           nan     1.043e-13  True   2.252e-11     2.087e-13       0.0
+
+*** Lightcurve info ***
+
+Lightcurve measured in the energy band: 100 MeV - 100 GeV
+
+Variability index : 130.336
+
+No peak measured for this source.
diff --git a/gammapy/catalog/tests/data/3fgl_J0023.4+0923.txt b/gammapy/catalog/tests/data/3fgl_J0023.4+0923.txt
@@ -0,0 +1,58 @@
+
+*** Basic info ***
+
+Catalog row index (zero-based) : 55
+Source name          : 3FGL J0023.4+0923 
+Extended name        :                   
+Associations         : PSR J0023+0923
+Other names          : 1FGL J0023.5+0930, 2FGL J0023.5+0924
+Class                : PSR  
+TeVCat flag          : No TeV association
+Other flags          : None
+
+*** Position info ***
+
+RA                   : 5.865 deg
+DEC                  : 9.389 deg
+GLON                 : 111.455 deg
+GLAT                 : -52.858 deg
+
+Semimajor (68%)      : 0.0525 deg
+Semiminor (68%)      : 0.0485 deg
+Position angle (68%) : -86.71 deg
+Semimajor (95%)      : 0.0852 deg
+Semiminor (95%)      : 0.0786 deg
+Position angle (95%) : -86.71 deg
+ROI number           : 576
+
+*** Spectral info ***
+
+Spectrum type                                 : PLExpCutoff     
+Detection significance (100 MeV - 300 GeV)    : 13.328
+Significance curvature                        : 5.7
+Cutoff energy                                 : 984 +- 239 MeV
+Pivot energy                                  : 905 MeV
+Power law spectral index                      : 2.283
+Spectral index                                : 0.971 +- 0.303
+Flux Density at pivot energy                  : 2.27e-12 +- 2.53e-13 cm-2 MeV-1 s-1
+Integral flux (1 - 100 GeV)                   : 1.12e-09 +- 1.25e-10 cm-2 s-1
+Energy flux (100 MeV - 100 GeV)               : 7.28e-12 +- 8.09e-13 erg cm-2 s-1
+
+*** Spectral points ***
+
+  e_min     e_max        flux     flux_errn   flux_errp      e2dnde     e2dnde_errn   e2dnde_errp  is_ul   flux_ul     e2dnde_ul    sqrt_TS  
+   MeV       MeV     1 / (cm2 s) 1 / (cm2 s) 1 / (cm2 s) erg / (cm2 s) erg / (cm2 s) erg / (cm2 s)       1 / (cm2 s) erg / (cm2 s)           
+--------- ---------- ----------- ----------- ----------- ------------- ------------- ------------- ----- ----------- ------------- ----------
+  100.000    300.000   3.158e-09   2.421e-09   2.484e-09     8.263e-13     6.335e-13     6.500e-13 False         nan           nan  1.3162491
+  300.000   1000.000   3.743e-09   4.966e-10   5.139e-10     2.719e-12     3.607e-13     3.733e-13 False         nan           nan   8.734414
+ 1000.000   3000.000   9.629e-10   1.320e-10   1.395e-10     2.157e-12     2.958e-13     3.125e-13 False         nan           nan   9.994864
+ 3000.000  10000.000   5.029e-11   2.401e-11   3.044e-11     2.625e-13     1.253e-13     1.589e-13 False         nan           nan  2.7636795
+10000.000 100000.000   7.682e-12         nan   1.888e-11     7.117e-14           nan     1.749e-13  True   4.544e-11     4.210e-13 0.96025896
+
+*** Lightcurve info ***
+
+Lightcurve measured in the energy band: 100 MeV - 100 GeV
+
+Variability index : 51.375
+
+No peak measured for this source.
diff --git a/gammapy/catalog/tests/data/3fgl_J0835.3-4510.txt b/gammapy/catalog/tests/data/3fgl_J0835.3-4510.txt
@@ -0,0 +1,58 @@
+
+*** Basic info ***
+
+Catalog row index (zero-based) : 960
+Source name          : 3FGL J0835.3-4510 
+Extended name        :                   
+Associations         : PSR J0835-4510, Vela, Vela Pulsar, 1AGL J0835-4509
+Other names          : 0FGL J0835.4-4510, 1FGL J0835.3-4510, 2FGL J0835.3-4510, 1FHL J0835.3-4510
+Class                : PSR  
+TeVCat flag          : Small TeV source
+Other flags          : None
+
+*** Position info ***
+
+RA                   : 128.838 deg
+DEC                  : -45.178 deg
+GLON                 : 263.555 deg
+GLAT                 : -2.787 deg
+
+Semimajor (68%)      : 0.0032 deg
+Semiminor (68%)      : 0.0032 deg
+Position angle (68%) : 20.08 deg
+Semimajor (95%)      : 0.0052 deg
+Semiminor (95%)      : 0.0052 deg
+Position angle (95%) : 20.08 deg
+ROI number           : 88
+
+*** Spectral info ***
+
+Spectrum type                                 : PLSuperExpCutoff
+Detection significance (100 MeV - 300 GeV)    : 1048.959
+Significance curvature                        : 54.0
+Super-exponential cutoff index                : 0.47586068511009216 +- 0.008638832718133926
+Pivot energy                                  : 833 MeV
+Power law spectral index                      : 1.952
+Spectral index                                : 1.003 +- 0.018
+Flux Density at pivot energy                  : 2.33e-09 +- 4.4e-12 cm-2 MeV-1 s-1
+Integral flux (1 - 100 GeV)                   : 1.3e-06 +- 2.89e-09 cm-2 s-1
+Energy flux (100 MeV - 100 GeV)               : 8.93e-09 +- 1.73e-11 erg cm-2 s-1
+
+*** Spectral points ***
+
+  e_min     e_max        flux     flux_errn   flux_errp      e2dnde     e2dnde_errn   e2dnde_errp  is_ul   flux_ul     e2dnde_ul    sqrt_TS  
+   MeV       MeV     1 / (cm2 s) 1 / (cm2 s) 1 / (cm2 s) erg / (cm2 s) erg / (cm2 s) erg / (cm2 s)       1 / (cm2 s) erg / (cm2 s)           
+--------- ---------- ----------- ----------- ----------- ------------- ------------- ------------- ----- ----------- ------------- ----------
+  100.000    300.000   5.376e-06   2.615e-08   2.615e-08     1.372e-09     6.673e-12     6.673e-12 False         nan           nan  160.97115
+  300.000   1000.000   3.217e-06   7.406e-09   7.406e-09     2.292e-09     5.278e-12     5.278e-12 False         nan           nan  528.53766
+ 1000.000   3000.000   1.070e-06   3.075e-09   3.075e-09     2.525e-09     7.256e-12     7.256e-12 False         nan           nan   711.6319
+ 3000.000  10000.000   2.162e-07   1.255e-09   1.255e-09     1.321e-09     7.670e-12     7.670e-12 False         nan           nan  465.89935
+10000.000 100000.000   1.138e-08   2.888e-10   2.888e-10     1.055e-10     2.676e-12     2.676e-12 False         nan           nan 111.192406
+
+*** Lightcurve info ***
+
+Lightcurve measured in the energy band: 100 MeV - 100 GeV
+
+Variability index : 20.009
+
+No peak measured for this source.
diff --git a/gammapy/catalog/tests/data/3fhl_j2301.9+5855e.txt b/gammapy/catalog/tests/data/3fhl_j2301.9+5855e.txt
@@ -0,0 +1,63 @@
+
+*** Basic info ***
+
+Catalog row index (zero-based) : 1500
+Source name          : 3FHL J2301.9+5855e
+Extended name        : FGES J2301.9+5855 
+Associations     : CTB 109, 3FGL J2301.2+5853
+ASSOC_PROB_BAY   : nan
+ASSOC_PROB_LR    : nan
+Class            : SNR    
+TeVCat flag      : No TeV association
+
+Significance (10 GeV - 2 TeV)    : 7.974
+Npred                            : 53.1
+
+*** Position info ***
+
+RA                   : 345.494 deg
+DEC                  : 58.920 deg
+GLON                 : 109.203 deg
+GLAT                 : -1.003 deg
+
+Semimajor (95%)      : nan deg
+Semiminor (95%)      : nan deg
+Position angle (95%) : nan deg
+ROI number           : 479
+*** Extended source information ***
+Model form       : Disk       
+Model semimajor  : 0.2488 deg
+Model semiminor  : 0.2488 deg
+Position angle   : 0.0000 deg
+Spatial function : RadialDisk 
+Spatial filename :                         
+
+
+*** Spectral fit info ***
+
+Spectrum type                    : PowerLaw   
+Significance curvature           : 1.0
+Power-law spectral index         : 2.006 +- 0.174
+Pivot energy                     : 30.2 GeV
+Flux Density at pivot energy     : 1.61e-12 +- 2.81e-13 cm-2 GeV-1 s-1
+Integral flux (10 GeV - 1 TeV)   : 1.46e-10 +- 2.57e-11 cm-2 s-1
+Energy flux (10 GeV - TeV)       : 1.08e-11 +- 2.9e-12 erg cm-2 s-1
+
+*** Spectral points ***
+
+ e_min   e_max       flux     flux_errn   flux_errp      e2dnde     e2dnde_errn   e2dnde_errp  is_ul   flux_ul     e2dnde_ul   sqrt_ts
+  GeV     GeV    1 / (cm2 s) 1 / (cm2 s) 1 / (cm2 s) erg / (cm2 s) erg / (cm2 s) erg / (cm2 s)       1 / (cm2 s) erg / (cm2 s)        
+------- -------- ----------- ----------- ----------- ------------- ------------- ------------- ----- ----------- ------------- -------
+ 10.000   20.000   7.545e-11   1.849e-11   2.071e-11     2.417e-12     5.923e-13     6.632e-13 False         nan           nan   5.446
+ 20.000   50.000   4.747e-11   1.296e-11   1.507e-11     2.534e-12     6.916e-13     8.042e-13 False         nan           nan   5.218
+ 50.000  150.000   2.058e-11   7.593e-12   9.512e-12     2.471e-12     9.117e-13     1.142e-12 False         nan           nan   4.016
+150.000  500.000   4.437e-12   3.076e-12   4.877e-12     1.522e-12     1.055e-12     1.673e-12 False         nan           nan   1.791
+500.000 2000.000   6.598e-17         nan   4.626e-12     7.039e-17           nan     4.936e-12  True   9.252e-12     9.872e-12   0.000
+
+*** Other info ***
+
+HEP Energy       : 364.828 GeV
+HEP Probability  : 0.849
+Bayesian Blocks  : 1 (not variable)
+Redshift         : nan
+NuPeak_obs       : nan Hz