Apply IncertaeSedis taxon in case of no matches, fixes http://dev.gbi…

…f.org/issues/browse/POR-2150
gbif · Jan 5, 2017 · bf744aa · bf744aa
1 parent a00a16a
commit bf744aa
Showing 1 changed file with 9 additions and 0 deletions.
diff --git a/...ocessor/src/main/java/org/gbif/occurrence/processor/interpreting/TaxonomyInterpreter.java b/...ocessor/src/main/java/org/gbif/occurrence/processor/interpreting/TaxonomyInterpreter.java
@@ -6,6 +6,7 @@
 import org.gbif.api.model.occurrence.Occurrence;
 import org.gbif.api.model.occurrence.VerbatimOccurrence;
 import org.gbif.api.vocabulary.Extension;
+import org.gbif.api.vocabulary.Kingdom;
 import org.gbif.api.vocabulary.OccurrenceIssue;
 import org.gbif.api.vocabulary.Rank;
 import org.gbif.common.parsers.RankParser;
@@ -239,9 +240,17 @@ public void interpretTaxonomy(VerbatimOccurrence verbatim, Occurrence occ) {
     } else {
       LOG.debug("No backbone match for occurrence {}", occ.getKey());
       occ.addIssue(OccurrenceIssue.TAXON_MATCH_NONE);
+      // assign unknown kingdom
+      applyKingdom(occ, Kingdom.INCERTAE_SEDIS);
     }
   }
 
+  private static void applyKingdom(Occurrence occ, Kingdom k){
+    occ.setTaxonKey(k.nubUsageKey());
+    occ.setScientificName(k.scientificName());
+    occ.setTaxonRank(Rank.KINGDOM);
+  }
+
   private static Rank interpretRank(Map<Term, String> terms){
     Rank rank = null;
     if (hasTerm(terms, DwcTerm.taxonRank)) {