pgr-mdb fails with agc v3.0 compressed sequences.

[bkille]

The indexing step fails immediately w/ the following:

$ ./release/pgr-mdb --version
pgr-mdb pgr-bin 0.5.1 (bioconda release build, linux [x86_64] [rustc 1.70.0 (90c541806 2023-05-31)])

$ echo hsap.chr1.agc > filelist

$ ./release/pgr-mdb filelist hsap.chr1
Reading AGC file using the AGC library writing in C can cause segmentation fault if wrong file type or corrupted AGC file is provided. If you see segmentation fault, please make sure you have a proper AGC file specified as the input file.
Segmentation fault (core dumped)

However, if I recreate the .agc file with v2.0 of agc, it runs just fine.

[cschin]

@bkille Thanks. BTW, I can't modify this repo and only check it from time to time.
please use this https://github.com/cschin/pgr-tk for the future. When I get a chance, I will look into AGC3.0 to see what is the issue and change PGR-TK to use it.