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amigo.yaml.tomodachi
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amigo.yaml.tomodachi
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---
AMIGO_1X_PUBLIC_CGI_BASE_URL:
comment: The public URL of an available AmiGO 1.x instance for link references.
type: url
value: http://amigo1.geneontology.org/cgi-bin/amigo
AMIGO_BALANCER:
comment: 'Mark this AmiGO 2 installation as behind a load balanacer or similar system. The practical effect of this flag is that if AmiGO detects *.error files (usually created by the global-message.pl script), it will return a 503 page signalling any upstream system that the instance is not currently ready.'
type: boolean
value: 1
AMIGO_BETA:
comment: Mark the AmiGO site as BETA (triggers some changes in variables and installed features).
type: boolean
value: 1
AMIGO_DYNAMIC_PATH:
comment: The full path to the location of the perl binaries.
type: directory
value: /home/bbop/jenkins/workspace/load-golr-tomodachi/perl/bin
AMIGO_DYNAMIC_URL:
comment: The URL that AMIGO_DYNAMIC_PATH maps to.
type: url
value: http://amigo2.berkeleybop.org
AMIGO_GOOGLE_ANALYTICS_ID:
comment: Google analytics ID. Optional.
type: string
value: 'UA-42073879-1'
AMIGO_LAYOUT_SEARCH:
comment: A whitespace separated list of class IDs to use for live search tabs on the search page.
type: string
value: annotation ontology bioentity complex_annotation family general bbop_term_ac
AMIGO_PUBLIC_GOLR_URL:
comment: The public URL of the GOlr server (including slash).
type: url
value: http://golr.berkeleybop.org/
AMIGO_ROOT:
comment: 'Unless you are doing something strange, the parent directory of this file.'
type: directory
value: /home/bbop/jenkins/workspace/load-golr-tomodachi
AMIGO_SERVER_NAME:
comment: 'The name by which your AmiGO instance wishes to known--think load balancer or cache situations. If you would rather this information not be reported, leave blank.'
type: string
value: tomodachi
AMIGO_STATIC_PATH:
comment: The full path to a usable static document directory where static and staging are located.
type: directory
value: /home/bbop/jenkins/workspace/load-golr-tomodachi/static
AMIGO_STATIC_URL:
comment: The URL for the static content. Can be local or remote.
type: url
value: http://tomodachi.berkeleybop.org/static
AMIGO_TERM_REGEXP:
comment: The regular expressions to identify internal ontology ids.
type: string
value: 'all|GO:[0-9]{7}'
AMIGO_VERBOSE:
comment: Log verbose AmiGO debugging messages.
type: boolean
value: 0
AMIGO_WORKING_PATH:
comment: Please enter the full path to readable/writable directory that will be used for things like temporary files and logs (if enabled).
type: directory
value: /tmp
GOLR_TIMESTAMP_LOCATION:
comment: 'This is the full path to the timestamp file that is optionally produced by OWLTools during GOlr loading. It contains information about download attempt times for the different loaded files. If not found or unusable, AmiGO 2 will gracefully ignore it.'
type: file
value: /home/bbop/local/src/git/amigo/golr/golr_timestamp.log
GO_BBOPJS_LOCATION:
comment: 'If this is not redefined to a new location (e.g. the BBOP-JS staging/ directory, it will use the bbop.js bundle packaged with AmiGO 2 (the one used in the unit tests) in the external/ directory.'
type: file
value: /home/bbop/jenkins/workspace/load-golr-tomodachi/external/bbop.js
GO_YAML_LOCATION:
comment: 'The full path to the YAML config files directory. In that directory, all files like *config.yaml will be scanned for use.'
type: directory
value: /home/bbop/jenkins/workspace/load-golr-tomodachi/metadata