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reordering by saving from Protege
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krchristie committed May 24, 2022
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Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions src/ontology/go-edit.obo
Expand Up @@ -327876,8 +327876,8 @@ name: obsolete interspecies quorum sensing
namespace: biological_process
def: "OBSOLETE. The process in which a community of single-celled organisms of different species monitors population density by detecting the concentration of small diffusible signal molecules." [GOC:mtg_pamgo_17jul06]
comment: The reason for obsoletion is that this term was an unnecessary grouping term.
is_obsolete: true
property_value: term_tracker_item https://github.com/geneontology/go-ontology/issues/17756 xsd:anyURI
is_obsolete: true

[Term]
id: GO:0052098
Expand All @@ -327893,8 +327893,8 @@ name: obsolete intraspecies quorum sensing
namespace: biological_process
def: "OBSOLETE. The process in which single-celled organisms of the same species monitor population density by detecting the concentration of small, diffusible signal molecules." [GOC:mtg_pamgo_17jul06]
comment: The reason for obsoletion is that this term was an unnecessary grouping term.
is_obsolete: true
property_value: term_tracker_item https://github.com/geneontology/go-ontology/issues/17756 xsd:anyURI
is_obsolete: true

[Term]
id: GO:0052102
Expand Down Expand Up @@ -388718,8 +388718,8 @@ synonym: "endoplasmic reticulum membrane protein complex" BROAD []
synonym: "ER membrane protein complex" BROAD [GOC:mah]
is_a: GO:0140534 ! endoplasmic reticulum protein-containing complex
relationship: part_of GO:0030176 ! integral component of endoplasmic reticulum membrane
property_value: term_tracker_item https://github.com/geneontology/go-ontology/issues/20234 xsd:anyURI
property_value: term_tracker_item https://github.com/geneontology/go-ontology/issues/13657 xsd:anyURI
property_value: term_tracker_item https://github.com/geneontology/go-ontology/issues/20234 xsd:anyURI
created_by: mah
creation_date: 2011-01-19T06:16:53Z

Expand Down Expand Up @@ -441010,8 +441010,8 @@ synonym: "auditory hair cell glycocalyx" BROAD []
synonym: "stereocilium glycocalyx" EXACT []
is_a: GO:0030112 ! glycocalyx
relationship: part_of GO:0032420 ! stereocilium
property_value: term_tracker_item https://github.com/geneontology/go-ontology/issues/19782 xsd:anyURI
property_value: term_tracker_item https://github.com/geneontology/go-ontology/issues/19780 xsd:anyURI
property_value: term_tracker_item https://github.com/geneontology/go-ontology/issues/19782 xsd:anyURI
created_by: krc
creation_date: 2020-07-15T00:56:35Z

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Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/go.owl
  • Version IRI: http://purl.obolibrary.org/obo/go/releases/2022-05-24/go.owl
  • Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/go.owl
  • Version IRI: http://purl.obolibrary.org/obo/go/releases/2022-05-24/go.owl
  • Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

(3S)-(+)-asterisca-2(9),6-diene synthase activity http://purl.obolibrary.org/obo/GO_0120086

Added

Cdc24p-Far1p-Gbetagamma complex http://purl.obolibrary.org/obo/GO_0120171

Added

DNA gyrase complex http://purl.obolibrary.org/obo/GO_0120217

Added

DNA negative supercoiling activity http://purl.obolibrary.org/obo/GO_0034335

Added

DNA topoisomerase IV complex http://purl.obolibrary.org/obo/GO_0009340

Added

DNA topoisomerase type I (single strand cut, ATP-independent) activity http://purl.obolibrary.org/obo/GO_0003917

Added

DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity http://purl.obolibrary.org/obo/GO_0003918

Added

DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex http://purl.obolibrary.org/obo/GO_0009330

Added

DNA-3'-diphospho-5'-guanosine diphosphatase http://purl.obolibrary.org/obo/GO_0120108

Added

EMC complex http://purl.obolibrary.org/obo/GO_0072546

Added

Formylglycine-generating oxidase activity http://purl.obolibrary.org/obo/GO_0120147

Added

Lsm1-7-Pat1 complex http://purl.obolibrary.org/obo/GO_1990726

Added

Lsm2-8 complex http://purl.obolibrary.org/obo/GO_0120115

Added

MBF transcription complex assembly http://purl.obolibrary.org/obo/GO_0120185

Added

MIH complex http://purl.obolibrary.org/obo/GO_0120155

Added

NuRD complex binding http://purl.obolibrary.org/obo/GO_0120325

Added

PAR polarity complex http://purl.obolibrary.org/obo/GO_0120157

Added

PNGase complex http://purl.obolibrary.org/obo/GO_0120125

Added

RecQ family helicase-topoisomerase III complex http://purl.obolibrary.org/obo/GO_0031422

Added

Sm-like protein family complex http://purl.obolibrary.org/obo/GO_0120114

Added

T cell meandering migration http://purl.obolibrary.org/obo/GO_0120117

Added

U6 snRNA (adenine-(43)-N(6))-methyltransferase activity http://purl.obolibrary.org/obo/GO_0120048

Added

UDP-glucose transmembrane transport http://purl.obolibrary.org/obo/GO_0015786

Added

UDP-glucose transmembrane transport into endoplasmic reticulum http://purl.obolibrary.org/obo/GO_0120112

Added

actomyosin contractile ring http://purl.obolibrary.org/obo/GO_0005826

Added

adherens junction disassembly http://purl.obolibrary.org/obo/GO_0120179

Added

all-trans retinal binding http://purl.obolibrary.org/obo/GO_0005503

Added

amastigogenesis http://purl.obolibrary.org/obo/GO_0120310

Added

axon cytoplasm http://purl.obolibrary.org/obo/GO_1904115

Added

bacterial-type flagellum motor http://purl.obolibrary.org/obo/GO_0120100

Added

bacterial-type flagellum rotor complex http://purl.obolibrary.org/obo/GO_0120107

Added

bacterial-type flagellum secretion apparatus http://purl.obolibrary.org/obo/GO_0120102

Added

bacterial-type flagellum stator complex http://purl.obolibrary.org/obo/GO_0120101

Added

basal body patch http://purl.obolibrary.org/obo/GO_0120220

Added

bilobe structure http://purl.obolibrary.org/obo/GO_0120120

Added

calcium-dependent carbohydrate binding http://purl.obolibrary.org/obo/GO_0120153

Added

calcium-dependent outer dynein arm binding http://purl.obolibrary.org/obo/GO_0120152

Added

cell-substrate junction disassembly http://purl.obolibrary.org/obo/GO_0120180

Added

centriolar subdistal appendage http://purl.obolibrary.org/obo/GO_0120103

Added

cerebrospinal fluid circulation http://purl.obolibrary.org/obo/GO_0090660

Added

ciliary basal body segregation http://purl.obolibrary.org/obo/GO_0120312

Added

ciliary pro-basal body maturation http://purl.obolibrary.org/obo/GO_0120311

Added

cilium attachment to cell body http://purl.obolibrary.org/obo/GO_0120309

Added

cilium movement involved in otolith formation http://purl.obolibrary.org/obo/GO_0003355

Added

coenzyme A binding http://purl.obolibrary.org/obo/GO_0120225

Added

cone photoreceptor disc membrane http://purl.obolibrary.org/obo/GO_0120201

Added

cone photoreceptor outer segment http://purl.obolibrary.org/obo/GO_0120199

Added

cone telodendria http://purl.obolibrary.org/obo/GO_0120209

Added

conidium germination http://purl.obolibrary.org/obo/GO_0120164

Added

contact inhibition http://purl.obolibrary.org/obo/GO_0060242

Added

crotonyl-CoA hydratase activity http://purl.obolibrary.org/obo/GO_0120092

Added

cytoplasm to vacuole transport by the NVT pathway http://purl.obolibrary.org/obo/GO_0120113

Added

dUMP kinase activity http://purl.obolibrary.org/obo/GO_0120136

Added

dendrite cytoplasm http://purl.obolibrary.org/obo/GO_0032839

Added

detection of cold stimulus involved in thermoception http://purl.obolibrary.org/obo/GO_0120169

Added

detection of hot stimulus involved in thermoception http://purl.obolibrary.org/obo/GO_0120168

Added

distal portion of axoneme http://purl.obolibrary.org/obo/GO_0120135

Added

endocytosis, site selection http://purl.obolibrary.org/obo/GO_0120207

Added

endothelial tip cell filopodium assembly http://purl.obolibrary.org/obo/GO_0120084

Added

epithelial cilium movement involved in determination of left/right asymmetry http://purl.obolibrary.org/obo/GO_0060287

Added

epithelial cilium movement involved in extracellular fluid movement http://purl.obolibrary.org/obo/GO_0003351

Added

flagella connector http://purl.obolibrary.org/obo/GO_0120118

Added

flagellum attachment zone http://purl.obolibrary.org/obo/GO_0120119

Added

focal adhesion disassembly http://purl.obolibrary.org/obo/GO_0120181

Added

glucagon processing http://purl.obolibrary.org/obo/GO_0120116

Added

glycosylphosphatidylinositol-mannosyltransferase II complex http://purl.obolibrary.org/obo/GO_0120097

Added

host cell centrosome http://purl.obolibrary.org/obo/GO_0120148

Added

host cell peroxisome http://purl.obolibrary.org/obo/GO_0120149

Added

host cell uropod http://purl.obolibrary.org/obo/GO_0120026

Added

host interaction involved in quorum sensing http://purl.obolibrary.org/obo/GO_0120218

Added

hypolemmal cisterna http://purl.obolibrary.org/obo/GO_1990039

Added

interphase mitotic telomere clustering http://purl.obolibrary.org/obo/GO_0120110

Added

intestinal motility http://purl.obolibrary.org/obo/GO_0120054

Added

intraciliary transport particle A binding http://purl.obolibrary.org/obo/GO_0120160

Added

intraciliary transport particle B binding http://purl.obolibrary.org/obo/GO_0120170

Added

jasmonic acid hydrolase http://purl.obolibrary.org/obo/GO_0120091

Added

large intestinal transit http://purl.obolibrary.org/obo/GO_0120056

Added

larynx development http://purl.obolibrary.org/obo/GO_0120224

Added

larynx morphogenesis http://purl.obolibrary.org/obo/GO_0120223

Added

lateral pseudopodium retraction http://purl.obolibrary.org/obo/GO_0120320

Added

lateral wall of outer hair cell http://purl.obolibrary.org/obo/GO_0120249

Added

maintenance of ciliary planar beating movement pattern http://purl.obolibrary.org/obo/GO_0120221

Added

matrilin complex http://purl.obolibrary.org/obo/GO_0120216

Added

membrane fusion priming complex http://purl.obolibrary.org/obo/GO_0120124

Added

methylcytosine to 5-glyceryl-methylcytosine dioxygenase activity http://purl.obolibrary.org/obo/GO_0120204

Added

mitotic actomyosin contractile ring, distal actin filament layer http://purl.obolibrary.org/obo/GO_0120106

Added

mitotic actomyosin contractile ring, intermediate layer http://purl.obolibrary.org/obo/GO_0120105

Added

mitotic actomyosin contractile ring, proximal layer http://purl.obolibrary.org/obo/GO_0120104

Added

mitotic telomere clustering and tethering at nuclear periphery http://purl.obolibrary.org/obo/GO_0120109

Added

mitotic telomere tethering at nuclear periphery http://purl.obolibrary.org/obo/GO_0044820

Added

mucociliary clearance http://purl.obolibrary.org/obo/GO_0120197

Added

negative regulation of ERBB4 signaling pathway http://purl.obolibrary.org/obo/GO_0120154

Added

negative regulation of actin cortical patch assembly http://purl.obolibrary.org/obo/GO_0120133

Added

negative regulation of anther dehiscence http://purl.obolibrary.org/obo/GO_0120196

Added

negative regulation of bile acid secretion http://purl.obolibrary.org/obo/GO_0120190

Added

negative regulation of cold-induced thermogenesis http://purl.obolibrary.org/obo/GO_0120163

Added

negative regulation of ecdysone receptor-mediated signaling pathway http://purl.obolibrary.org/obo/GO_0120143

Added

negative regulation of endocardial cushion cell differentiation http://purl.obolibrary.org/obo/GO_0120076

Added

negative regulation of focal adhesion disassembly http://purl.obolibrary.org/obo/GO_0120184

Added

negative regulation of gastric emptying http://purl.obolibrary.org/obo/GO_0120061

Added

negative regulation of histidine biosynthetic process http://purl.obolibrary.org/obo/GO_0120214

Added

negative regulation of imaginal disc-derived wing size http://purl.obolibrary.org/obo/GO_0044720

Added

negative regulation of macrophage proliferation http://purl.obolibrary.org/obo/GO_0120042

Added

negative regulation of osmosensory signaling pathway http://purl.obolibrary.org/obo/GO_0120028

Added

negative regulation of peptidyl-lysine crotonylation http://purl.obolibrary.org/obo/GO_0120094

Added

negative regulation of phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity http://purl.obolibrary.org/obo/GO_0120140

Added

negative regulation of protein localization to chromatin http://purl.obolibrary.org/obo/GO_0120186

Added

negative regulation of pyloric antrum smooth muscle contraction http://purl.obolibrary.org/obo/GO_0120073

Added

negative regulation of small intestinal transit http://purl.obolibrary.org/obo/GO_0120059

Added

negative regulation of stomach fundus smooth muscle contraction http://purl.obolibrary.org/obo/GO_0120070

Added

negative regulation of termination of RNA polymerase II transcription http://purl.obolibrary.org/obo/GO_0120191

Added

negative regulation of torso signaling pathway http://purl.obolibrary.org/obo/GO_0120177

Added

neuron projection cytoplasm http://purl.obolibrary.org/obo/GO_0120111

Added

obsolete interspecies quorum sensing http://purl.obolibrary.org/obo/GO_0052097

Added

obsolete intraspecies quorum sensing http://purl.obolibrary.org/obo/GO_0052100

Added

olfactory sociosexual communication http://purl.obolibrary.org/obo/GO_0120318

Added

perithecium development http://purl.obolibrary.org/obo/GO_0120165

Added

photoreceptor distal connecting cilium http://purl.obolibrary.org/obo/GO_0120206

Added

photoreceptor proximal connecting cilium http://purl.obolibrary.org/obo/GO_0120205

Added

platelet glycocalyx http://purl.obolibrary.org/obo/GO_0120240

Added

positive regulation of actin filament bundle convergence involved in mitotic contractile ring assembly http://purl.obolibrary.org/obo/GO_0120172

Added

positive regulation of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity http://purl.obolibrary.org/obo/GO_0120137

Added

positive regulation of anther dehiscence http://purl.obolibrary.org/obo/GO_0120195

Added

positive regulation of apoptotic process in bone marrow cell http://purl.obolibrary.org/obo/GO_0120132

Added

positive regulation of bile acid secretion http://purl.obolibrary.org/obo/GO_0120189

Added

positive regulation of cilium beat frequency involved in ciliary motility http://purl.obolibrary.org/obo/GO_0120030

Added

positive regulation of cold-induced thermogenesis http://purl.obolibrary.org/obo/GO_0120162

Added

positive regulation of collagen catabolic process http://purl.obolibrary.org/obo/GO_0120158

Added

positive regulation of ecdysone receptor-mediated signaling pathway http://purl.obolibrary.org/obo/GO_0120142

Added

positive regulation of endocardial cushion cell differentiation http://purl.obolibrary.org/obo/GO_0120075

Added

positive regulation of focal adhesion disassembly http://purl.obolibrary.org/obo/GO_0120183

Added

positive regulation of gastric emptying http://purl.obolibrary.org/obo/GO_0120062

Added

positive regulation of histidine biosynthetic process http://purl.obolibrary.org/obo/GO_0120215

Added

positive regulation of imaginal disc-derived wing size http://purl.obolibrary.org/obo/GO_0120198

Added

positive regulation of macrophage proliferation http://purl.obolibrary.org/obo/GO_0120041

Added

positive regulation of mitotic actomyosin contractile ring disassembly http://purl.obolibrary.org/obo/GO_0120151

Added

positive regulation of phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity http://purl.obolibrary.org/obo/GO_0120139

Added

positive regulation of protein localization to chromatin http://purl.obolibrary.org/obo/GO_0120187

Added

positive regulation of protein localization to medial cortical node http://purl.obolibrary.org/obo/GO_0120047

Added

positive regulation of pyloric antrum smooth muscle contraction http://purl.obolibrary.org/obo/GO_0120072

Added

positive regulation of small intestinal transit http://purl.obolibrary.org/obo/GO_0120058

Added

positive regulation of stomach fundus smooth muscle contraction http://purl.obolibrary.org/obo/GO_0120069

Added

positive regulation of torso signaling pathway http://purl.obolibrary.org/obo/GO_0120176

Added

proacrosomal vesicle fusion http://purl.obolibrary.org/obo/GO_0120211

Added

procentriole http://purl.obolibrary.org/obo/GO_0120098

Added

procentriole replication complex http://purl.obolibrary.org/obo/GO_0120099

Added

procyclogenesis http://purl.obolibrary.org/obo/GO_0120324

Removed

Added

prolactin metabolic process http://purl.obolibrary.org/obo/GO_0120122

Added

protein localization to basal ectoplasmic specialization http://purl.obolibrary.org/obo/GO_0120145

Added

protein localization to centriolar satellite http://purl.obolibrary.org/obo/GO_0120329

Added

proton export across plasma membrane http://purl.obolibrary.org/obo/GO_0120029

Added

protoperithecium formation http://purl.obolibrary.org/obo/GO_0120166

Added

proximal portion of axoneme http://purl.obolibrary.org/obo/GO_0120134

Added

pyloric antrum smooth muscle contraction http://purl.obolibrary.org/obo/GO_0120065

Added

pyloric canal smooth muscle contraction http://purl.obolibrary.org/obo/GO_0120066

Added

pyloric sphincter smooth muscle contraction http://purl.obolibrary.org/obo/GO_0120067

Added

quorum sensing http://purl.obolibrary.org/obo/GO_0009372

Added

rRNA pseudouridine synthase activity http://purl.obolibrary.org/obo/GO_0120159

Added

regulation of actin filament bundle convergence involved in mitotic contractile ring assembly http://purl.obolibrary.org/obo/GO_0120173

Added

regulation of anther dehiscence http://purl.obolibrary.org/obo/GO_0120194

Added

regulation of bile acid secretion http://purl.obolibrary.org/obo/GO_0120188

Added

regulation of blastocyst development http://purl.obolibrary.org/obo/GO_0120222

Added

regulation of cold-induced thermogenesis http://purl.obolibrary.org/obo/GO_0120161

Added

regulation of ecdysone receptor-mediated signaling pathway http://purl.obolibrary.org/obo/GO_0120141

Added

regulation of endocardial cushion cell differentiation http://purl.obolibrary.org/obo/GO_0120074

Added

regulation of focal adhesion disassembly http://purl.obolibrary.org/obo/GO_0120182

Added

regulation of gastric emptying http://purl.obolibrary.org/obo/GO_0120060

Added

regulation of histidine biosynthetic process http://purl.obolibrary.org/obo/GO_0120213

Added

regulation of macrophage proliferation http://purl.obolibrary.org/obo/GO_0120040

Added

regulation of mitotic actomyosin contractile ring disassembly http://purl.obolibrary.org/obo/GO_0120150

Added

regulation of osmosensory signaling pathway http://purl.obolibrary.org/obo/GO_0120027

Added

regulation of peptidyl-lysine crotonylation http://purl.obolibrary.org/obo/GO_0120093

Added

regulation of phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity http://purl.obolibrary.org/obo/GO_0120138

Added

regulation of protein localization to medial cortical node http://purl.obolibrary.org/obo/GO_0120046

Added

regulation of pyloric antrum smooth muscle contraction http://purl.obolibrary.org/obo/GO_0120071

Added

regulation of small intestinal transit http://purl.obolibrary.org/obo/GO_0120057

Added

regulation of stomach fundus smooth muscle contraction http://purl.obolibrary.org/obo/GO_0120068

Added

regulation of torso signaling pathway http://purl.obolibrary.org/obo/GO_0120175

Added

response to copper ion starvation http://purl.obolibrary.org/obo/GO_0120126

Added

response to zinc ion starvation http://purl.obolibrary.org/obo/GO_0120127

Added

ribitol beta-1,4-xylosyltransferase activity http://purl.obolibrary.org/obo/GO_0120053

Added

rod photoreceptor disc lumen http://purl.obolibrary.org/obo/GO_0120203

Added

rod photoreceptor disc membrane http://purl.obolibrary.org/obo/GO_0120202

Added

rod photoreceptor outer segment http://purl.obolibrary.org/obo/GO_0120200

Added

rod telodendria http://purl.obolibrary.org/obo/GO_0120210

Added

rough endoplasmic reticulum cisterna http://purl.obolibrary.org/obo/GO_0120083

Added

small intestinal transit http://purl.obolibrary.org/obo/GO_0120055

Added

smooth endoplasmic reticulum cisterna http://purl.obolibrary.org/obo/GO_0120082

Added

snRNA (adenine-N6)-methylation http://purl.obolibrary.org/obo/GO_0120049

Added

sperm flagellum assembly http://purl.obolibrary.org/obo/GO_0120316

Added

sperm head-tail coupling apparatus http://purl.obolibrary.org/obo/GO_0120212

Added

sperm mitochondrial sheath http://purl.obolibrary.org/obo/GO_0097226

Added

sperm mitochondrial sheath assembly http://purl.obolibrary.org/obo/GO_0120317

Added

stereocilium base http://purl.obolibrary.org/obo/GO_0120044

Added

stereocilium coat http://purl.obolibrary.org/obo/GO_0120234

Added

stereocilium maintenance http://purl.obolibrary.org/obo/GO_0120045

Added

stereocilium shaft http://purl.obolibrary.org/obo/GO_0120043

Added

steroid hormone biosynthetic process http://purl.obolibrary.org/obo/GO_0120178

Added

stomach pylorus smooth muscle contraction http://purl.obolibrary.org/obo/GO_0120064

Added

stomach smooth muscle contraction http://purl.obolibrary.org/obo/GO_0120063

Added

stress-induced homeostatically regulated protein degradation pathway http://purl.obolibrary.org/obo/GO_0120174

Added

subapical part of cell http://purl.obolibrary.org/obo/GO_0120219

Added

subrhabdomeral cisterna http://purl.obolibrary.org/obo/GO_0016029

Added

sulfatide binding http://purl.obolibrary.org/obo/GO_0120146

Added

telodendria http://purl.obolibrary.org/obo/GO_0120208

Added

tight junction assembly http://purl.obolibrary.org/obo/GO_0120192

Added

tight junction organization http://purl.obolibrary.org/obo/GO_0120193

Added

transposon integration involved in RNA-mediated transposition http://purl.obolibrary.org/obo/GO_0120085

Added

tripartite attachment complex http://purl.obolibrary.org/obo/GO_0120121

Added

ubiquitin activating enzyme complex http://purl.obolibrary.org/obo/GO_0120123

Added

vacuole-isolation membrane contact site http://purl.obolibrary.org/obo/GO_0120095

Added

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