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Inconsistent usage of 'occurs in' some cell #14976

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pgaudet opened this issue Jan 30, 2018 · 3 comments
Closed

Inconsistent usage of 'occurs in' some cell #14976

pgaudet opened this issue Jan 30, 2018 · 3 comments

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@pgaudet
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pgaudet commented Jan 30, 2018

Hello,

We are using 'occurs in' some cell very inconsistently, for example:
cell redox homeostasis
image

but we don't have such a relation for example in 'cellular process'

This create weird stats for processes occurring in cells; for example in UniProt there are 369,208 entries annotated to cell via inferences; yet UniProt has over 90 million entries; this number isn't very accurate.

One option might be to put a 'do not annotate' flag on 'cell', so that these annotations would not be created.
Would this work ? @ukemi @cmungall

Thanks, Pascale

@ukemi
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ukemi commented Jan 30, 2018

This is because of the old problem of 'cellular' in GO not only referring to things that occur in a single cell, for example cell-cell communication or synaptic transmission.

@pgaudet
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pgaudet commented Jan 30, 2018

OK. How about

'adding do not annotate' flag on 'cell'?

@pgaudet
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pgaudet commented Jan 30, 2018

This is redundant with #12849

@pgaudet pgaudet closed this as completed Jan 30, 2018
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