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Missing parent: [GO term] regulation of biological quality #24125
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Both of these should be classified automatically under there, but they have logical definitions that refer to obsolete terms. I would have expected this to be caught in a check; I'll look into it. |
Both of those terms referenced OBA biological attributes that have been obsoleted and moved to PATO. But our 'regulation of biological quality' pattern (https://github.com/geneontology/go-ontology/blob/master/docs/patterns/regulation_of_characteristic.md) specifies 'biological attribute' as the filler range, not any PATO characteristic/quality. For that reason these two terms still don't classify under 'regulation of biological quality'. We can discuss changing the pattern in our upcoming design patterns discussion. |
At the Jan 2021 (?) jamboree we had discussed to obsolete this branch, this is a bunch of phenotypes. I would be tempted to close this for now, as this is a huge project. |
It probably isn't as huge as it seems. Many of these terms just need this parentage removed. That could be a first step. |
Right ! |
Lots of issues with the "regulation of biological quality" branch, but it seems the best parent for these terms:
GO:0031413 regulation of buoyancy
GO:0060378 regulation of brood size
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