Update missing MetaCyc2GO mappings for SGD YeastPathways

[dustine32]

@balhoff @cmungall We now have the complete set of Metacyc2GO BP mappings for all YeastPathways models thanks to @suzialeksander @srengel. yeast_pathway_id_labels_gos_gps121322.xlsx

How can we get these updated in the GO ontology? Is it as simple as reformatting them into this metacyc2go GH file?

Once they're in the ontology they will be added to models on the next YeastPathways GO-CAM regen as described in geneontology/pathways2GO#159 (comment).

[cmungall]

When these are ready they should be incorporated directly in the ontology as xrefs. Mechanistically there are a few ways to do this. Jim suggested turning the xsls into turtle (essentially just space separating and adding . at the end) and doing a robot merge

however, there are some content issues. We discussed on pw2go call

Not all of these are MetaCyc IDs. Some are local IDs to yeastpathways, it doesn't really make sense to house these centrally

There is also the issue of mapping at different granularity. Some of these should be narrow mappings

[pgaudet]

File is not yet ready to load.

[pgaudet]

this is not the current issue anymore. Manual mapping were done by Suzi and Stacia