Obsoletion request: GO:0006725 cellular aromatic compound metabolic process

[ValWood]

Please provide as much information as you can:

• GO term ID and Label

• GO:0006725 cellular aromatic compound metabolic process
• GO:0019438 aromatic compound biosynthetic process
• GO:0019439 aromatic compound catabolic process
  No regulation terms
  (note that children do not have cellular in name)

• Reason for deprecation Put an x in the appropriate box:

• The reason for obsoletion is that this term was an unnecessary grouping term.

• "Replace by" term (ID and label)

related GO:0008152 metabolic process

• "Consider" term(s) (ID and label)
  Suggestions for reannotation

• Are there annotations to this term?

• How many EXP:

• Are there mappings and cross references to this term? (InterPro, Keywords; check QuickGO cross-references section)

• Is this term in a subset? (check the AmiGO page for that term)

• Any other information

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Checklist for ontology editor

Check term usage and metadata in Protégé

• check term usage in the ontology
• check internal mappings: RHEA, EC, MetaCyc
• check subset usage
• check taxon constraints

Check annotations

• create Annotation Review spreadsheet
• • Annotation Review template: https://docs.google.com/spreadsheets/d/1izV3q1jnq_Ybg5MJ53O_b5BCTkGtjl_Fi-cOg3-7eBE/edit#gid=0
• • Instructions: https://wiki.geneontology.org/Annotation_Review_Request
• create annotation review ticket: https://github.com/geneontology/go-annotation/issues/new?assignees=&labels=annotation+review&template=annotation-review-for-obsoletion.md&title=Review+annotations+to+%5BINSERT+GO+TERM%5D
• find external mappings (via IEAS), include in obsoletion notice
• tag curators in Annotation Review ticket. Responsible annotator for each group: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Notification

• create obsoletion announcement
• announce to GO friends (go-friends@mailman.stanford.edu)
• paste the text in the ontology ticket

[ValWood]

change parent
GO:0006725 cellular aromatic compound metabolic process
to
GO:0008152 metabolic process
for

GO:0042822 pyridoxal phosphate metabolic process is_a
GO:0006139 nucleobase-containing compound metabolic process is_a
GO:0018955 phenanthrene metabolic process is_a
GO:0009072 aromatic amino acid metabolic process is_a
GO:0046435 3-(3-hydroxy)phenylpropionate metabolic process is_a
GO:0018958 phenol-containing compound metabolic process is_a
GO:1902179 verruculogen metabolic process is_a
GO:0072521 purine-containing compound metabolic process is_a
GO:0051165 2,5-dihydroxypyridine metabolic process is_a
GO:0018930 3-methylquinoline metabolic process is_a
GO:0050783 cocaine metabolic process is_a
GO:0019507 pyridine metabolic process is_a
GO:1902654 aromatic primary alcohol metabolic process is_a
GO:0052838 thiazole metabolic process is_a
GO:0019438 aromatic compound biosynthetic process is_a
GO:0019439 aromatic compound catabolic process is_a
GO:0009698 phenylpropanoid metabolic process is_a
GO:0042723 thiamine-containing compound metabolic process is_a
GO:1900597 demethylkotanin metabolic process is_a
GO:0042537 benzene-containing compound metabolic process is_a
GO:0042558 pteridine-containing compound metabolic process is_a
GO:0018884 carbazole metabolic process is_a
GO:0019857 5-methylcytosine metabolic process is_a
GO:0045460 sterigmatocystin metabolic process is_a
GO:0046152 ommochrome metabolic process is_a
GO:0019536 vibriobactin metabolic process is_a
GO:0018965 s-triazine compound metabolic process is_a
GO:0052803 imidazole-containing compound metabolic process is_a
GO:0034275 kynurenic acid metabolic process is_a
GO:0042817 pyridoxal metabolic process is_a
GO:0033013 tetrapyrrole metabolic process is_a
GO:0042818 pyridoxamine metabolic process is_a
GO:0033491 coniferin metabolic process is_a
GO:1905003 picolinic acid metabolic process is_a
GO:1900594 (+)-kotanin metabolic process is_a
GO:0009690 cytokinin metabolic process is_a
GO:0008614 pyridoxine metabolic process is_a
GO:1900819 orlandin metabolic process is_a
GO:0042430 indole-containing compound metabolic process is_a
GO:1901847 nicotinate metabolic process is_a
GO:0050813 epothilone metabolic process is_a
GO:0018894 dibenzo-p-dioxin metabolic process is_a
GO:0018893 dibenzofuran metabolic process is_a
GO:0044597 daunorubicin metabolic process is_a
GO:0044598 doxorubicin metabolic process

[ValWood]

@pgaudet 'cellular aromatic compound metabolic process' was in go_slim_pir (I have deleted this, who should I tell?)