v0.1.0

What's Changed

• simplify differ code significantly, reporting only the useful columns by @sierra-moxon in #4
• add GO processor to help with finding all terms that are is_a/part_of descendants of BP terms, fixes #4 by @sierra-moxon in #7
• Update README.md by @sierra-moxon in #8
• Refine human annotation generation to exclude multi-ortholog BP annotation conversions by @sierra-moxon in #10
• pull out download file step - for calling from pipeline by @sierra-moxon in #11
• set the URLs to remote for the files we need to get outside of the do… by @sierra-moxon in #12
• use snapshot for gpi files for now by @sierra-moxon in #13
• add GPI download to the download cli by @sierra-moxon in #14
• update taxon id by @sierra-moxon in #15
• add merge gaf routine by @sierra-moxon in #16
• pass the Pr2GO annotations file through the ortho GAF processing ruleset as a first pass by @sierra-moxon in #17
• fix annotation order in return method by @sierra-moxon in #18
• fix annotation order in return method by @sierra-moxon in #19
• create gpad dumper wrapper by @sierra-moxon in #20
• updating to fix header/provided_by/prefix errors found in GPAD 2.0 output from pipeline runs by @sierra-moxon in #21
• fixing up PR id mappings by @sierra-moxon in #22
• fixing up subject id in p2go transformer from PR to MGI by @sierra-moxon in #23
• remove debugging statements by @sierra-moxon in #24
• update file location with change in pipeline name by @sierra-moxon in #25
• string double MGI namespace by @sierra-moxon in #26
• fixing goref for human/mouse ortho by @sierra-moxon in #27
• updating makefile commands by @sierra-moxon in #28
• get ontology file from snapshot to speed silver pipeline by @sierra-moxon in #29
• add some download retries here by @sierra-moxon in #30
• lint and add docstrings by @sierra-moxon in #31
• move original annotation source from MGI to GO_Central by @sierra-moxon in #35
• change annotation date to current date this preprocessing script runs by @sierra-moxon in #39
• set provider back to MGI to see if that fixes the missing annotations by @sierra-moxon in #41
• date_assigned, provider, IKR annotation inclusion fixes by @sierra-moxon in #42
• add a validate GAF method to return error status if errors found in r… by @sierra-moxon in #43
• add goref 33 processing to p2g by @sierra-moxon in #45
• condense makefile by @sierra-moxon in #46
• mock test files by @sierra-moxon in #47
• revert loosened check for GO_Central with REF 00033 for ortho, keep f… by @sierra-moxon in #48
• remove debugging, simplify method, remove duplicate method by @sierra-moxon in #50
• lint and clean by @sierra-moxon in #51
• tweak evidence code filtering in p2g by @sierra-moxon in #52
• tighten the constraint aroudn MGI provided_by in GOA laod by @sierra-moxon in #60
• MGI provided by then exclude by @sierra-moxon in #61
• do not change date for annotation in protein to go file by @sierra-moxon in #63
• update validate command to send diff snippets through GO Rules by @sierra-moxon in #64
• added documentation image by @sierra-moxon in #67
• Issue 369 rename output gaf and compress resulting merged file by @sierra-moxon in #68
• remove print statements that clog the jenkins log by @sierra-moxon in #69
• refactor code to support gzip format of final output by @sierra-moxon in #70

New Contributors

• @sierra-moxon made their first contribution in #4

Full Changelog: https://github.com/geneontology/gopreprocess/commits/v0.1.0