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Need to check RGD identifiers in neo #52
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@vanaukenk - my github handle is @krchristie, so if you were meaning to tag me in your initial comment, that's not me. |
Updated above; thanks @krchristie |
Also see #51 . |
kltm
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Explore short-circuiting for not getting latest NEO #35 Also: geneontology/neo#53 geneontology/neo#52 geneontology/neo#51
This was referenced Mar 12, 2020
@vanaukenk Could you check to see if these are available now? |
From the testing I've done, I believe this is cleared. Please re-open if there are issues. |
It works for me to use RGD:1309181, the ID I reported a problem with to @vanaukenk |
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In the Makefile, it looks like rgd is included in the list of sources for annotatable entity identifiers.
However, not all identifiers in the RGD GAF seem to be available for annotation in Noctua.
For example, RGD:1309181 has eight annotations in the current RGD GAF, but isn't in the autocomplete menu as an option. The eight annotations are seven IEAs and one ISO.
Do all entries for a group's GAF get included in NEO or is there some filtering step somewhere that excludes some?
Note that RGD does not submit gpad/gpi yet according to the rgd.yaml file.
@krchristie
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