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Need to check RGD identifiers in neo #52

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vanaukenk opened this issue Feb 18, 2020 · 6 comments
Closed

Need to check RGD identifiers in neo #52

vanaukenk opened this issue Feb 18, 2020 · 6 comments

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@vanaukenk
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vanaukenk commented Feb 18, 2020

In the Makefile, it looks like rgd is included in the list of sources for annotatable entity identifiers.

However, not all identifiers in the RGD GAF seem to be available for annotation in Noctua.

For example, RGD:1309181 has eight annotations in the current RGD GAF, but isn't in the autocomplete menu as an option. The eight annotations are seven IEAs and one ISO.

Do all entries for a group's GAF get included in NEO or is there some filtering step somewhere that excludes some?

Note that RGD does not submit gpad/gpi yet according to the rgd.yaml file.

@krchristie

@krchristie
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@vanaukenk - my github handle is @krchristie, so if you were meaning to tag me in your initial comment, that's not me.

@vanaukenk
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Updated above; thanks @krchristie

@kltm kltm added the bug label Feb 18, 2020
@kltm
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kltm commented Feb 18, 2020

Also see #51 .

@kltm
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kltm commented Mar 19, 2020

@vanaukenk Could you check to see if these are available now?

@kltm
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kltm commented Mar 19, 2020

From the testing I've done, I believe this is cleared. Please re-open if there are issues.

@krchristie
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It works for me to use RGD:1309181, the ID I reported a problem with to @vanaukenk

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