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Add GO-CAM QC checks and reports to pipeline #47

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kltm opened this issue Oct 28, 2022 · 2 comments
Open

Add GO-CAM QC checks and reports to pipeline #47

kltm opened this issue Oct 28, 2022 · 2 comments
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@kltm
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kltm commented Oct 28, 2022

Project link

https://github.com/orgs/geneontology/projects/156

Project description

Currently, there are no systematic QC or reports produced for the stored GO-CAM (TTL or blazegraph) models.
This project would be tasked with adding basic checks and reports for GO-CAMs.

Suggestion is to start with the infrastructure that exists for GO-CAM imports, and place the reports into /reports for pipeline runs.

PI

PaulT

Project owner (PO)

Pascale

Technical lead (TL)

Dustin

Other personnel (OP)

Seth

Technical specs

Unnecessary at this point, as the work so far is just porting over @dustine32 's previous work.

Other comments

N/A

@kltm kltm added Needs LA approval Needs final approval from the Lead Architect Needs PI Needs PM approval Needs final approval from the Project Manager Needs PO Needs tech doc Needs TL labels Oct 28, 2022
@kltm
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kltm commented Mar 8, 2023

Talking with @cmungall , he has tested some methods for loading GO-CAM models into a local relational database (sqlite3) and they are likely very reasonable for doing many of the stats we'd want to start with.

@kltm
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kltm commented May 7, 2024

@pgaudet We should backfill some of the metadata for this project.

@kltm kltm added Ready and removed Needs LA approval Needs final approval from the Lead Architect Needs PM approval Needs final approval from the Project Manager Needs tech doc Needs PO Needs TL Needs PI labels May 7, 2024
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