Extract transcript and intron sequences from the genome sequence using the eisaR package in order to quantify both intronic (unprocessed) and exonic (processed) RNA abundances in each cell with alevin.
A necessary preprocessing step to enable RNA velocity analysis.
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Transcriptome preprocessing for RNA Velocity wrapper module for GenePattern.
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genepattern/PreprocessVelocityTranscriptome
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Transcriptome preprocessing for RNA Velocity wrapper module for GenePattern.
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