Skip to content

Commit

Permalink
Replace local dirname with pattern to be repalced when testing
Browse files Browse the repository at this point in the history
  • Loading branch information
@ebelter
ebelter committed Aug 13, 2018
1 parent dd05b4d commit 66ba8d8
Show file tree
Hide file tree
Showing 3 changed files with 34 additions and 31 deletions.
5 changes: 4 additions & 1 deletion t/Pacbio-Command-Assembly-BaxToBam-GenerateCommands.t
View file
Original file line number Diff line number Diff line change
Expand Up @@ -39,6 +39,8 @@ subtest 'execute' => sub{
ok($cmd->result, 'command result');

my $expected_output = File::Slurp::slurp( $test{data_dir}->file('expected.out')->stringify );
my $base_test_data_dir = TenxTestEnv::test_data_directory();
$expected_output =~ s/\%TDD/$base_test_data_dir/g;
is($output, $expected_output, 'output commands matches');

};
Expand All @@ -57,9 +59,10 @@ subtest 'execute with some bams completed' => sub{
open local(*STDOUT), '>', \$output or die $!;
lives_ok(sub{ $cmd->execute }, 'execute');
ok($cmd->result, 'command result');
#diag($output);

my $expected_output = File::Slurp::slurp( $test{data_dir}->file('expected.some-done.out')->stringify );
my $base_test_data_dir = TenxTestEnv::test_data_directory();
$expected_output =~ s/\%TDD/$base_test_data_dir/g;
is($output, $expected_output, 'output commands matches');

};
Expand Down
32 changes: 16 additions & 16 deletions t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/expected.out
View file
Original file line number Diff line number Diff line change
@@ -1,16 +1,16 @@
bsub -q long -o 6U00E3_A01.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/A01_1/Analysis_Results/m160610_215437_00116_c100976122550000001823226708101630_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/A01_1/Analysis_Results/m160610_215437_00116_c100976122550000001823226708101630_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/A01_1/Analysis_Results/m160610_215437_00116_c100976122550000001823226708101630_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_A02.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/A02_1/Analysis_Results/m160613_024817_00116_c100976392550000001823226708101600_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/A02_1/Analysis_Results/m160613_024817_00116_c100976392550000001823226708101600_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/A02_1/Analysis_Results/m160613_024817_00116_c100976392550000001823226708101600_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_B01.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/B01_1/Analysis_Results/m160611_041253_00116_c100976122550000001823226708101631_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/B01_1/Analysis_Results/m160611_041253_00116_c100976122550000001823226708101631_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/B01_1/Analysis_Results/m160611_041253_00116_c100976122550000001823226708101631_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_B02.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/B02_1/Analysis_Results/m160613_070741_00116_c100976392550000001823226708101601_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/B02_1/Analysis_Results/m160613_070741_00116_c100976392550000001823226708101601_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/B02_1/Analysis_Results/m160613_070741_00116_c100976392550000001823226708101601_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_C01.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/C01_1/Analysis_Results/m160611_103201_00116_c100976122550000001823226708101632_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/C01_1/Analysis_Results/m160611_103201_00116_c100976122550000001823226708101632_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/C01_1/Analysis_Results/m160611_103201_00116_c100976122550000001823226708101632_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_C02.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/C02_1/Analysis_Results/m160613_112823_00116_c100976392550000001823226708101602_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/C02_1/Analysis_Results/m160613_112823_00116_c100976392550000001823226708101602_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/C02_1/Analysis_Results/m160613_112823_00116_c100976392550000001823226708101602_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_D01.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/D01_1/Analysis_Results/m160611_165410_00116_c100976122550000001823226708101633_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/D01_1/Analysis_Results/m160611_165410_00116_c100976122550000001823226708101633_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/D01_1/Analysis_Results/m160611_165410_00116_c100976122550000001823226708101633_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_D02.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/D02_1/Analysis_Results/m160613_154904_00116_c100976392550000001823226708101603_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/D02_1/Analysis_Results/m160613_154904_00116_c100976392550000001823226708101603_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/D02_1/Analysis_Results/m160613_154904_00116_c100976392550000001823226708101603_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_E01.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/E01_1/Analysis_Results/m160611_231419_00116_c100976122550000001823226708101634_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/E01_1/Analysis_Results/m160611_231419_00116_c100976122550000001823226708101634_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/E01_1/Analysis_Results/m160611_231419_00116_c100976122550000001823226708101634_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_E02.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/E02_1/Analysis_Results/m160613_200939_00116_c100976392550000001823226708101604_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/E02_1/Analysis_Results/m160613_200939_00116_c100976392550000001823226708101604_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/E02_1/Analysis_Results/m160613_200939_00116_c100976392550000001823226708101604_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_F01.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/F01_1/Analysis_Results/m160612_053356_00116_c100976122550000001823226708101635_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/F01_1/Analysis_Results/m160612_053356_00116_c100976122550000001823226708101635_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/F01_1/Analysis_Results/m160612_053356_00116_c100976122550000001823226708101635_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_F02.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/F02_1/Analysis_Results/m160614_003005_00116_c100976392550000001823226708101605_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/F02_1/Analysis_Results/m160614_003005_00116_c100976392550000001823226708101605_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/F02_1/Analysis_Results/m160614_003005_00116_c100976392550000001823226708101605_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_G01.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/G01_1/Analysis_Results/m160612_115607_00116_c100976122550000001823226708101636_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/G01_1/Analysis_Results/m160612_115607_00116_c100976122550000001823226708101636_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/G01_1/Analysis_Results/m160612_115607_00116_c100976122550000001823226708101636_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_G02.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/G02_1/Analysis_Results/m160614_045352_00116_c100976392550000001823226708101606_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/G02_1/Analysis_Results/m160614_045352_00116_c100976392550000001823226708101606_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/G02_1/Analysis_Results/m160614_045352_00116_c100976392550000001823226708101606_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_H01.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/H01_1/Analysis_Results/m160612_181848_00116_c100976122550000001823226708101637_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/H01_1/Analysis_Results/m160612_181848_00116_c100976122550000001823226708101637_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/H01_1/Analysis_Results/m160612_181848_00116_c100976122550000001823226708101637_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_H02.out bam2bax /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/H02_1/Analysis_Results/m160614_091421_00116_c100976392550000001823226708101607_s1_p0.1.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/H02_1/Analysis_Results/m160614_091421_00116_c100976392550000001823226708101607_s1_p0.2.bax.h5 /home/ebelter/dev/tenx/t/data/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/H02_1/Analysis_Results/m160614_091421_00116_c100976392550000001823226708101607_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_A01.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/A01_1/Analysis_Results/m160610_215437_00116_c100976122550000001823226708101630_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/A01_1/Analysis_Results/m160610_215437_00116_c100976122550000001823226708101630_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/A01_1/Analysis_Results/m160610_215437_00116_c100976122550000001823226708101630_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_A02.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/A02_1/Analysis_Results/m160613_024817_00116_c100976392550000001823226708101600_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/A02_1/Analysis_Results/m160613_024817_00116_c100976392550000001823226708101600_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/A02_1/Analysis_Results/m160613_024817_00116_c100976392550000001823226708101600_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_B01.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/B01_1/Analysis_Results/m160611_041253_00116_c100976122550000001823226708101631_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/B01_1/Analysis_Results/m160611_041253_00116_c100976122550000001823226708101631_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/B01_1/Analysis_Results/m160611_041253_00116_c100976122550000001823226708101631_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_B02.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/B02_1/Analysis_Results/m160613_070741_00116_c100976392550000001823226708101601_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/B02_1/Analysis_Results/m160613_070741_00116_c100976392550000001823226708101601_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/B02_1/Analysis_Results/m160613_070741_00116_c100976392550000001823226708101601_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_C01.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/C01_1/Analysis_Results/m160611_103201_00116_c100976122550000001823226708101632_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/C01_1/Analysis_Results/m160611_103201_00116_c100976122550000001823226708101632_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/C01_1/Analysis_Results/m160611_103201_00116_c100976122550000001823226708101632_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_C02.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/C02_1/Analysis_Results/m160613_112823_00116_c100976392550000001823226708101602_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/C02_1/Analysis_Results/m160613_112823_00116_c100976392550000001823226708101602_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/C02_1/Analysis_Results/m160613_112823_00116_c100976392550000001823226708101602_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_D01.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/D01_1/Analysis_Results/m160611_165410_00116_c100976122550000001823226708101633_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/D01_1/Analysis_Results/m160611_165410_00116_c100976122550000001823226708101633_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/D01_1/Analysis_Results/m160611_165410_00116_c100976122550000001823226708101633_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_D02.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/D02_1/Analysis_Results/m160613_154904_00116_c100976392550000001823226708101603_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/D02_1/Analysis_Results/m160613_154904_00116_c100976392550000001823226708101603_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/D02_1/Analysis_Results/m160613_154904_00116_c100976392550000001823226708101603_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_E01.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/E01_1/Analysis_Results/m160611_231419_00116_c100976122550000001823226708101634_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/E01_1/Analysis_Results/m160611_231419_00116_c100976122550000001823226708101634_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/E01_1/Analysis_Results/m160611_231419_00116_c100976122550000001823226708101634_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_E02.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/E02_1/Analysis_Results/m160613_200939_00116_c100976392550000001823226708101604_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/E02_1/Analysis_Results/m160613_200939_00116_c100976392550000001823226708101604_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/E02_1/Analysis_Results/m160613_200939_00116_c100976392550000001823226708101604_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_F01.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/F01_1/Analysis_Results/m160612_053356_00116_c100976122550000001823226708101635_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/F01_1/Analysis_Results/m160612_053356_00116_c100976122550000001823226708101635_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/F01_1/Analysis_Results/m160612_053356_00116_c100976122550000001823226708101635_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_F02.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/F02_1/Analysis_Results/m160614_003005_00116_c100976392550000001823226708101605_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/F02_1/Analysis_Results/m160614_003005_00116_c100976392550000001823226708101605_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/F02_1/Analysis_Results/m160614_003005_00116_c100976392550000001823226708101605_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_G01.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/G01_1/Analysis_Results/m160612_115607_00116_c100976122550000001823226708101636_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/G01_1/Analysis_Results/m160612_115607_00116_c100976122550000001823226708101636_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/G01_1/Analysis_Results/m160612_115607_00116_c100976122550000001823226708101636_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_G02.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/G02_1/Analysis_Results/m160614_045352_00116_c100976392550000001823226708101606_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/G02_1/Analysis_Results/m160614_045352_00116_c100976392550000001823226708101606_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/G02_1/Analysis_Results/m160614_045352_00116_c100976392550000001823226708101606_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_H01.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/H01_1/Analysis_Results/m160612_181848_00116_c100976122550000001823226708101637_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/H01_1/Analysis_Results/m160612_181848_00116_c100976122550000001823226708101637_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/H01_1/Analysis_Results/m160612_181848_00116_c100976122550000001823226708101637_s1_p0.3.bax.h5
bsub -q long -o 6U00E3_H02.out bam2bax %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/H02_1/Analysis_Results/m160614_091421_00116_c100976392550000001823226708101607_s1_p0.1.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/H02_1/Analysis_Results/m160614_091421_00116_c100976392550000001823226708101607_s1_p0.2.bax.h5 %TDD/Pacbio-Command-Assembly-BaxToBam-GenerateCommands/6U00E3/H02_1/Analysis_Results/m160614_091421_00116_c100976392550000001823226708101607_s1_p0.3.bax.h5

0 comments on commit 66ba8d8

Please sign in to comment.