GAG Version 2.0.1

5-11-2017:
updated version number

5-8-2017:
Looks like we're ready to make this release. Time for final testing/review.

• fixed a bug where seq overlap check false negatives allowed nonsensical coords to be assigned to features that should have already been removed.
• we now write a genome.mrna.fasta
• genome.mrna.fasta and genome.proteins.fasta now have id, parent id, and name in their headers

4-7-2017:
Since the last release, GAG has been rewritten to be batch job and scripting friendly rather than interactive.

It's been quite some time since the last release and the original team has turned over. We are currently working to resolve open issues, debug, and bring GAG to its next stable release.

We encourage you to make bug reports and, if possible, include commands, sample data, and expected results which can be used to reproduce the error.

GAG v1.1

Genome Annotation Generator

A console-based program to read, modify, annotate and output genomic data. Can write files to .gff3 or to the NCBI's .tbl format. Perfect if you're trying to submit a genome to NCBI.

To run, type 'python gag.py'

See documentation at http://genomeannotation.github.io/GAG