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genomeannotation

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  1. GAG GAG Public

    Generates an NCBI .tbl file of annotations on a genome.

    Python 64 20

  2. bioinformatics-tools bioinformatics-tools Public

    Awk, bash, python scripts for processing NGS data

    Python 14 11

  3. annie annie Public

    annie = ANNotation Information Extractor

    Python 6 3

  4. OrthoMCL-docker OrthoMCL-docker Public

    An OrthoMCL setup in a docker image

    Shell 4 6

  5. transvestigator transvestigator Public

    Validates transcriptome and prepares it for submission to the NCBI

    Python 3 1

  6. PyLep_MAP PyLep_MAP Public

    Python Bioinformatics pipeline for Lep-MAP, rQTL, Super-scaffold assemblies

    Python 2

Repositories

Showing 10 of 37 repositories
  • GAG Public

    Generates an NCBI .tbl file of annotations on a genome.

    genomeannotation/GAG’s past year of commit activity
    Python 64 MIT 20 14 0 Updated Mar 5, 2018
  • transvestigator Public

    Validates transcriptome and prepares it for submission to the NCBI

    genomeannotation/transvestigator’s past year of commit activity
    Python 3 MIT 1 7 0 Updated Sep 16, 2017
  • PyLep_MAP Public

    Python Bioinformatics pipeline for Lep-MAP, rQTL, Super-scaffold assemblies

    genomeannotation/PyLep_MAP’s past year of commit activity
    Python 2 0 0 0 Updated Jul 23, 2016
  • PySTACKS Public

    Python STACKS pipeline

    genomeannotation/PySTACKS’s past year of commit activity
    Python 0 0 0 0 Updated Jul 23, 2016
  • YART Public

    yet another reformatting tool

    genomeannotation/YART’s past year of commit activity
    Python 0 0 0 0 Updated Jul 20, 2016
  • annie Public

    annie = ANNotation Information Extractor

    genomeannotation/annie’s past year of commit activity
    Python 6 MIT 3 5 0 Updated Jul 4, 2016
  • reformat Public

    Tool that outputs structure and pedegree files from .vcf, plink.map, plink.ped, hapmap files

    genomeannotation/reformat’s past year of commit activity
    Python 0 1 0 0 Updated Jun 22, 2016
  • name_change Public

    Tool to rename a list of names in a file from a provided dictionary file

    genomeannotation/name_change’s past year of commit activity
    Python 1 0 0 0 Updated May 20, 2016
  • WhosYourDaddy Public

    A simple tool to find a Father's genome if it has gone missing

    genomeannotation/WhosYourDaddy’s past year of commit activity
    Python 0 0 0 0 Updated May 18, 2016
  • 454_data_scripts Public

    Useful code for parsing 454 data in FORTRAN

    genomeannotation/454_data_scripts’s past year of commit activity
    Python 0 0 0 0 Updated Feb 27, 2016
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