use is_alive in place of isAlive (deprecated) and force pymongo version

genouest · Apr 28, 2022 · b76e714 · b76e714
1 parent e0f8090
commit b76e714
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Showing 4 changed files with 7 additions and 3 deletions.
diff --git a/CHANGES.txt b/CHANGES.txt
@@ -1,3 +1,7 @@
+3.1.21:
+  Freeze pymongo to 3.12.3 (4.x breaks)
+  Change isAlive() which is deprecated in python 3.9 to is_alive
+
 3.1.20:
   Follow-up of #127 to get last release in file (refactor and bug fix)
 3.1.19:

diff --git a/biomaj/process/processfactory.py b/biomaj/process/processfactory.py
@@ -66,7 +66,7 @@ def run_threads(self, simulate=False):
                     kill_received = True
                     for t in running_th:
                         t.kill_received = True
-                running_th = [t.join(1000) for t in running_th if t is not None and t.isAlive()]
+                running_th = [t.join(1000) for t in running_th if t is not None and t.is_alive()]
             except KeyboardInterrupt:
                 logging.warn("Ctrl-c received! Sending kill to threads...")
                 logging.warn("Running tasks will continue and process will stop.")

diff --git a/requirements.txt b/requirements.txt
@@ -5,7 +5,7 @@ biomaj_process>=3.0.12
 biomaj_cli
 mock
 nose
-pymongo>=3.2
+pymongo==3.12.3
 pycurl
 tabulate
 py-bcrypt

diff --git a/setup.py b/setup.py
@@ -36,7 +36,7 @@ def run(self):
     'url': 'http://biomaj.genouest.org',
     'download_url': 'http://biomaj.genouest.org',
     'author_email': 'olivier.sallou@irisa.fr',
-    'version': '3.1.20',
+    'version': '3.1.21',
      'classifiers': [
         # How mature is this project? Common values are
         #   3 - Alpha