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Update changelog
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lizziel committed Jul 16, 2024
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Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
Tag name:
Originator(s): lizziel
Date:
One-line Summary: Update GEOS-Chem to 14.3.1, HEMCO to 3.8.1, and add Cloud-J 7.7.1 photolysis
Github PR URL: https://github.com/ESCOMP/CAM/pull/996
One-line Summary: Update GEOS-Chem to 14.4.1, HEMCO to 3.8.1, and add Cloud-J 7.7.2, HETP 1.0
Github PR URL: https://github.com/ESCOMP/CAM/pull/1093

Purpose of changes (include the issue number and title text for each relevant GitHub issue):

Expand All @@ -22,13 +22,9 @@ List all files added and what they do: N/A

List all existing files that have been modified, and describe the changes:

M .gitignore
- Add new external src/chemistry/cloud_j

M Externals_CAM.cfg
- Update GEOS-Chem from 14.1.2 to 14.3.1
- Update HEMCO_CESM from _ to _
- Add Cloud-J 7.7.1 external to compute photolysis rates for GEOS-Chem
M .gitmodules
- Update GEOS-Chem and HEMCO_CESM versions
- Add new dependencies cloud_j and hetp

M bld/build-namelist
- Add defaults for GEOS-Chem namelist input directories
Expand Down Expand Up @@ -56,9 +52,17 @@ M bld/namelist_files/use_cases/hist_geoschem.xml
M bld/namelist_files/use_cases/hist_geoschem_nudged.xml
- Delete GEOS-Chem chem inputs directory since now in defaults

M cime_config/buildnml
- todo

M cime_config/config_component.xml
- Remove GEOS-chem from CAM40 and CAM50 options

M testdefs/testlist_cam.xml
- todo

A src/chemistry/cloud_j

M src/chemistry/geoschem/chem_mods.F90
- Update hard-coded nTracersMax, gas_pcnst, and nslvd used for
GEOS-Chem compsets
Expand All @@ -68,13 +72,19 @@ M src/chemistry/geoschem/chemistry.F90
- Replace hard-coded photolysis inputs directory with namelist value
- Add aerosol distribution fix to deposit SO4 using Neu as gas instead of aerosol

M src/chemistry/geoschem/geoschem_src

M src/chemistry/geoschem/mo_sim_dat.F90
- Add new species to solsym: BUTDI (butendedial) and FURA (furan)

A src/chemistry/hetp

M src/chemistry/mozart/mo_neu_wetdep.F90
- Restrict henrys law coefficient assignment error print to masterproc
- Add GEOS-Chem bulk sulfates SO4 and SO4S

M src/hemco

If there were any failures reported from running test_driver.sh on any test
platform, and checkin with these failures has been OK'd by the gatekeeper,
then copy the lines from the td.*.status files for the failed tests to the
Expand Down Expand Up @@ -331,9 +341,6 @@ List all files eliminated:

$ git diff --name-status cam_development..tj2016 | grep ^D
D src/physics/simple/tj2016.F90
=======
===============================================================


List all files added and what they do: N/A

Expand All @@ -349,15 +356,14 @@ M bld/configure

M src/physics/simple/tj2016_cam.F90
- Updated API into CCPP-ized TJ2016 precip and sfc_plb_hs run functions
(See https://github.com/ESCOMP/atmospheric_physics/pull/92 for API change desciription).
(See https://github.com/ESCOMP/atmospheric_physics/pull/92 for API change desciription).

If there were any failures reported from running test_driver.sh on any test
platform, and checkin with these failures has been OK'd by the gatekeeper,
then copy the lines from the td.*.status files for the failed tests to the
appropriate machine below. All failed tests must be justified.

derecho/intel/aux_cam:

ERP_Ln9.f09_f09_mg17.FCSD_HCO.derecho_intel.cam-outfrq9s (Overall: FAIL) details:
FAIL ERP_Ln9.f09_f09_mg17.FCSD_HCO.derecho_intel.cam-outfrq9s COMPARE_base_rest
SMS_D_Ln9_P1280x1.ne0ARCTICne30x4_ne0ARCTICne30x4_mt12.FHIST.derecho_intel.cam-outfrq9s
Expand All @@ -380,7 +386,6 @@ izumi/gnu/aux_cam: N/A
CAM tag used for the baseline comparison tests if different than previous
tag:
- cesm2_3_alpha17g for manually testing FTJ16 compset
=======

Summarize any changes to answers, i.e.,
- what code configurations:
Expand Down Expand Up @@ -1056,6 +1061,7 @@ src/physics/cam/nucleate_ice_cam.F90
src/physics/cam/phys_control.F90
src/physics/cam/vertical_diffusion.F90
. change 'cam_dev' to 'cam7'

src/physics/cam/zm_conv_intr.F90
. check whether zmconv_parcel_pbl is set true when the bottom layer thickness is
less than 100 m. Issue a warning to the log file if it's not.
Expand Down Expand Up @@ -1107,7 +1113,6 @@ tag:

Summarize any changes to answers: BFB - all diffs are due changing the test
grid, the test case name, or the compset definition (CLM50 -> CLM51).
=======

===============================================================
===============================================================
Expand Down Expand Up @@ -1469,121 +1474,6 @@ izumi/nag/aux_cam: all B4B, except:
izumi/gnu/aux_cam: all BFB

Summarize any changes to answers: bit-for-bit unchanged except GEOS-Chem and HEMCO tests described in issue #1018
=======
Tag name:
Originator(s): lizziel
Date:
One-line Summary: Update GEOS-Chem to 14.3.1, HEMCO to 3.8.1, and add Cloud-J 7.7.1 external
Github PR URL: https://github.com/ESCOMP/CAM/pull/996
>>>>>>> 385fa589 (Update changelog post-merge)

Purpose of changes (include the issue number and title text for each relevant GitHub issue):

Describe any changes made to build system:

Describe any changes made to the namelist:

List any changes to the defaults for the boundary datasets:

Describe any substantial timing or memory changes:

Code reviewed by:

List all files eliminated: N/A

List all files added and what they do: N/A

List all existing files that have been modified, and describe the changes:
M .gitignore

- Add new external src/chemistry/cloud_j

M Externals_CAM.cfg
- Update GEOS-Chem from 14.1.2 to 14.3.1
- Update HEMCO_CESM from _ to _
- Add Cloud-J 7.7.1 external to compute photolysis rates for GEOS-Chem

M bld/build-namelist
- Add defaults for GEOS-Chem namelist input directories

M bld/configure
- Add MODEL_CESM and MODEL_GEOSCHEM to geoschem chem_cppdefs for use in Cloud-J
- Update hard-coded chem_nadv used for GEOS-Chem

M bld/namelist_files/geoschem_master_gas_drydep_list.xml
M bld/namelist_files/geoschem_master_gas_wetdep_list.xml
- Add new GEOS-Chem deposited species FURA
- Add SO4 which is a non-MAM aerosol species in GEOS-Chem

M bld/namelist_files/namelist_defaults_cam.xml
- Update default dep_data_file used for GEOS-Chem
- Add two input directories for GEOS-Chem

M bld/namelist_files/namelist_definition.xml
- Change GEOS-Chem chem inputs directory name
- Add new GEOS-Chem input directory used for Cloud-J

M bld/namelist_files/use_cases/2000_geoschem.xml
M bld/namelist_files/use_cases/2010_geoschem.xml
M bld/namelist_files/use_cases/hist_geoschem.xml
M bld/namelist_files/use_cases/hist_geoschem_nudged.xml
- Delete GEOS-Chem chem inputs directory since now in defaults

M cime_config/config_component.xml
- Remove GEOS-chem from CAM40 and CAM50 options

M src/chemistry/geoschem/chem_mods.F90
- Update hard-coded nTracersMax, gas_pcnst, and nslvd used for
GEOS-Chem compsets

M src/chemistry/geoschem/chemistry.F90
- Updates for compatibility with GEOS-Chem 14.3.1
- Replace hard-coded photolysis inputs directory with namelist value
- Add aerosol distribution fix to deposit SO4 using Neu as gas instead of aerosol

M src/chemistry/geoschem/mo_sim_dat.F90
- Add new species to solsym: BUTDI (butendedial) and FURA (furan)

M src/chemistry/mozart/mo_neu_wetdep.F90
- Restrict henrys law coefficient assignment error print to masterproc
- Add GEOS-Chem bulk sulfates SO4 and SO4S

If there were any failures reported from running test_driver.sh on any test
platform, and checkin with these failures has been OK'd by the gatekeeper,
then copy the lines from the td.*.status files for the failed tests to the
appropriate machine below. All failed tests must be justified.

derecho/intel/aux_cam:

izumi/nag/aux_cam:

izumi/gnu/aux_cam:

CAM tag used for the baseline comparison tests if different than previous
tag:

Summarize any changes to answers, i.e.,
- what code configurations:
- what platforms/compilers:
- nature of change (roundoff; larger than roundoff but same climate; new
climate):

If bitwise differences were observed, how did you show they were no worse
than roundoff?

If this tag changes climate describe the run(s) done to evaluate the new
climate in enough detail that it(they) could be reproduced, i.e.,
- source tag (all code used must be in the repository):
- platform/compilers:
- configure commandline:
- build-namelist command (or complete namelist):
- MSS location of output:

MSS location of control simulations used to validate new climate:

URL for AMWG diagnostics output used to validate new climate:

===============================================================
===============================================================

Tag name: cam6_3_158
Expand Down Expand Up @@ -2001,7 +1891,6 @@ List all files eliminated: N/A
List all files added and what they do: N/A

List all existing files that have been modified, and describe the changes:

M Externals.cfg
- Bring in updated CMEPS and CDEPS to get U10 changes made in CMEPS

Expand Down

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