This version of Gephi will not reder graphs in either the current OS X or RHEL 6 versions of the software

[ajpowel]

Hello -

The current downloadable version of Gephi will not render graphs from .dot or .csv file types. We've tried on OS X (multiple machines) & RHEL6, & no instance of the software runs.

On the OS X machine, there is this version of Java:

java version "1.6.0_65"
Java(TM) SE Runtime Environment (build 1.6.0_65-b14-466.1-11M4716)
Java HotSpot(TM) 64-Bit Server VM (build 20.65-b04-466.1, mixed mode)

On the RHEL machine, there is this version of Java:

java version "1.7.0_85"
OpenJDK Runtime Environment (rhel-2.6.1.3.el6_7-x86_64 u85-b01)
OpenJDK 64-Bit Server VM (build 24.85-b03, mixed mode)

Any help/Gephi fix up you could offer will be most appreciated!

[duncdrum]

@ajpowel this often works when I run into similar problems.
Even with nothing rendered, can you try to export your file to gexf format? (under file -> export -> gexf (not .gephi). Does it work, or do you see error reports?
Then restart gephi, and open that file, see what happens.
If you see no errors but still can't see a graph, you should look at the gexf file in a text or better xml editor. Does the file look like it contains all the nodes and edges that it should. Can you validate the file? If there are validation errors can you post them here?

[ajpowel]

Hi there -

I tried your suggestion w/ both .gefx & .gml formats, but neither worked : (

Any further suggestions?

Best, AJP

On 18 November 2015 at 00:15, Duncan Paterson notifications@github.com
wrote:

@ajpowe this often works when I run into similar problems. E
ven with nothing rendered, can you try to export your file to gexf format?
(under file -> export -> gexf (not .gephi). Does it work? or report errors?
Then close gephi, and open that file, see what happens.
If you see no errors but still can't see a graph, you should look at the
gexf file in a text or better xml editor. Does the file look like it
contains all the nodes and edges that it should. Can you validate the file?

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Reply to this email directly or view it on GitHub
#1186 (comment).

Regards, AJP

[duncdrum]

@ajpowel can you open the gexf file in a text editor and see if the nodes and edges are present? Can you validate the file?
Could you post a links to the dot and gexf files to see if we can reproduce?

[mbastian]

Closing old issue. Please try again with the recent 0.9.1 version and reopen if you still have issues. Thanks.

[ajpowel]

I did. many thanks. So far, it's great!

On 18 February 2016 at 15:14, Mathieu Bastian notifications@github.com
wrote:

Closing old issue. Please try again with the recent 0.9.1 version and
reopen if you still have issues. Thanks.

—
Reply to this email directly or view it on GitHub
#1186 (comment).

Regards, AJP