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v0.10.1

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@wwood wwood released this 11 Feb 13:09
· 140 commits to main since this release
  • graft: New option --decoy_database to exclude sequences which have a better diamond hit to a database of decoys than the sequences in the GraftM package.
  • graft: New search method diamond+hmmsearch requiring hits to be detected by both hmmsearch and diamond.
  • graft: Merging reads before taxonomic placement is now default.
  • Removed dependency on skbio, instead use dendropy for tree parsing.
  • Many bugfixes and internal code improvements.