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Gerstein Lab

Popular repositories

  1. ThermoNet is a computational framework for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep…

    Python 84 18

  2. SAMChain Public

    Python 28 7

  3. MUSIC Public

    MUltiScale enrIchment Calling for ChIP-Seq Datasets

    C++ 22 1

  4. exceRpt Public

    Forked from rkitchen/exceRpt

    Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets

    HTML 20 8

  5. aloft Public

    ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the human genome.

    Python 18 3

  6. Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivity profiles

    Python 16 9

Repositories

  • shiny-dim-reduction Public

    This project applies dimensionality reduction to tabular data and generates applications for visualizing the results.

    R 2 0 0 0 Updated May 19, 2023
  • CSS 0 0 0 0 Updated May 10, 2023
  • MEDIQA-Chat-2023 Public

    MEDIQA-Chat-2023 GersteinLab solution

    Jupyter Notebook 1 0 0 0 Updated May 9, 2023
  • REPIC-copy Public

    Copy of REliable PIcking by Consensus (REPIC)

    Python 0 BSD-3-Clause 2 0 0 Updated Apr 6, 2023
  • exceRpt Public

    Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets

    HTML 20 GPL-3.0 20 0 0 Updated Apr 5, 2023
  • idash22bc Public

    Solution to track 1 of iDASH 2022 secure genome analysis competition

    JavaScript 2 BSD-3-Clause 0 0 0 Updated Dec 16, 2022
  • PLIGHT Public

    Privacy Leakage through Inference across Genotypic HMM Trajectories

    Python 1 GPL-3.0 0 0 0 Updated Dec 11, 2022
  • MOBI Public
    Shell 0 0 0 0 Updated Dec 4, 2022
  • entexBERT Public

    The DNABERT model for ENTEx

    Python 4 0 0 0 Updated Oct 7, 2022
  • ThermoNet Public

    ThermoNet is a computational framework for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep 3D convolutional neural networks.

    Python 84 GPL-3.0 18 2 0 Updated Oct 7, 2022

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