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Gerstein Lab

Popular repositories

  1. ThermoNet is a computational framework for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep…

    Python 32 9

  2. MUSIC Public

    MUltiScale enrIchment Calling for ChIP-Seq Datasets

    C++ 22 1

  3. aloft Public

    ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the human genome.

    Python 18 4

  4. exceRpt Public

    Forked from rkitchen/exceRpt

    Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets

    HTML 18 6

  5. SAMChain Public

    Python 18 7

  6. Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivity profiles

    Python 16 8

Repositories

  • SAMChain Public
    Python 18 MIT 7 1 0 Updated May 23, 2022
  • shiny-dim-reduction Public

    This project applies dimensionality reduction to tabular data and generates applications for visualizing the results.

    R 1 0 0 0 Updated May 19, 2022
  • forest-fire-clustering Public

    A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality

    Python 1 MIT 0 0 0 Updated May 18, 2022
  • rpgQTL Public
    Python 0 BSD-3-Clause 0 0 0 Updated May 13, 2022
  • ThermoNet Public

    ThermoNet is a computational framework for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep 3D convolutional neural networks.

    Python 32 GPL-3.0 9 2 0 Updated May 13, 2022
  • CSS 0 0 0 0 Updated May 8, 2022
  • DeepVelo Public
    Jupyter Notebook 3 1 1 1 Updated May 4, 2022
  • MOBI Public
    Shell 0 0 0 0 Updated Feb 20, 2022
  • starrpeaker Public

    STARRPeaker: STARR-seq peak caller

    Python 13 GPL-3.0 7 1 0 Updated Jan 11, 2022
  • DECODE Public

    A Deep-learning Framework for Condensing Enhancers and Refining Boundaries with Large-scale Functional Assays

    Jupyter Notebook 0 0 0 0 Updated Nov 30, 2021

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