Skip to content
@gersteinlab

Gerstein Lab

Popular repositories

  1. ThermoNet is a computational framework for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep…

    Python 61 14

  2. SAMChain Public

    Python 25 7

  3. MUSIC Public

    MUltiScale enrIchment Calling for ChIP-Seq Datasets

    C++ 21 1

  4. exceRpt Public

    Forked from rkitchen/exceRpt

    Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets

    HTML 19 6

  5. aloft Public

    ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the human genome.

    Python 18 3

  6. Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivity profiles

    Python 16 8

Repositories

  • idash22bc Public

    Solution to track 1 of iDASH 2022 secure genome analysis competition

    JavaScript 0 BSD-3-Clause 0 0 0 Updated Nov 22, 2022
  • CSS 0 0 0 0 Updated Nov 12, 2022
  • entexBERT Public

    The DNABERT model for ENTEx

    Python 0 0 0 0 Updated Oct 7, 2022
  • ThermoNet Public

    ThermoNet is a computational framework for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep 3D convolutional neural networks.

    Python 61 GPL-3.0 14 1 0 Updated Oct 7, 2022
  • Nextflow 0 1 0 0 Updated Sep 24, 2022
  • siglasso Public

    Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood

    R 8 4 3 0 Updated Aug 22, 2022
  • PLIGHT Public

    Privacy Leakage through Inference across Genotypic HMM Trajectories

    Python 1 GPL-3.0 0 0 0 Updated Aug 15, 2022
  • DeepVelo Public
    Jupyter Notebook 7 1 1 1 Updated Aug 5, 2022
  • starrpeaker Public

    STARRPeaker: STARR-seq peak caller

    Python 14 GPL-3.0 7 0 0 Updated Jul 6, 2022
  • shiny-dim-reduction Public

    This project applies dimensionality reduction to tabular data and generates applications for visualizing the results.

    R 2 0 0 0 Updated Jun 28, 2022

Top languages

Loading…

Most used topics

Loading…