Skip to content
@gersteinlab

Gerstein Lab

Popular repositories

  1. ThermoNet is a computational framework for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep…

    Python 35 10

  2. SAMChain Public

    Python 24 7

  3. MUSIC Public

    MUltiScale enrIchment Calling for ChIP-Seq Datasets

    C++ 22 1

  4. aloft Public

    ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the human genome.

    Python 18 4

  5. exceRpt Public

    Forked from rkitchen/exceRpt

    Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets

    HTML 18 6

  6. Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivity profiles

    Python 16 8

Repositories

  • PLIGHT Public

    Privacy Leakage through Inference across Genotypic HMM Trajectories

    Python 1 GPL-3.0 0 0 0 Updated Aug 15, 2022
  • CSS 0 0 0 0 Updated Aug 8, 2022
  • DeepVelo Public
    Jupyter Notebook 6 1 1 1 Updated Aug 5, 2022
  • starrpeaker Public

    STARRPeaker: STARR-seq peak caller

    Python 14 GPL-3.0 7 0 0 Updated Jul 6, 2022
  • shiny-dim-reduction Public

    This project applies dimensionality reduction to tabular data and generates applications for visualizing the results.

    R 1 0 0 0 Updated Jun 28, 2022
  • HTML 0 0 0 0 Updated Jun 20, 2022
  • SAMChain Public
    Python 24 MIT 7 1 0 Updated May 23, 2022
  • forest-fire-clustering Public

    A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality

    Python 6 MIT 0 0 0 Updated May 18, 2022
  • ThermoNet Public

    ThermoNet is a computational framework for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep 3D convolutional neural networks.

    Python 35 GPL-3.0 10 0 0 Updated May 13, 2022
  • CSS 0 0 0 0 Updated May 8, 2022

Top languages

Loading…

Most used topics

Loading…