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@gersteinlab

Gerstein Lab

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  1. ThermoNet is a computational framework for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep…

    Python 29 8

  2. MUSIC Public

    MUltiScale enrIchment Calling for ChIP-Seq Datasets

    C++ 22

  3. aloft Public

    ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the human genome.

    Python 18 4

  4. exceRpt Public

    Forked from rkitchen/exceRpt

    Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets

    HTML 18 6

  5. SAMChain Public

    Python 17 5

  6. Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivity profiles

    Python 15 7

Repositories

  • shiny-dim-reduction Public

    This project applies dimensionality reduction to tabular data and generates applications for visualizing the results.

    R 0 0 0 0 Updated Dec 6, 2021
  • forest-fire-clustering Public

    A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality

    Python 0 MIT 0 0 0 Updated Dec 2, 2021
  • DECODE Public

    A Deep-learning Framework for Condensing Enhancers and Refining Boundaries with Large-scale Functional Assays

    Jupyter Notebook 0 0 0 0 Updated Nov 30, 2021
  • scDynamo Public

    Data-driven scRNA-seq Dynamics with Neural Ordinary Differential Equations

    Jupyter Notebook 0 0 0 0 Updated Nov 27, 2021
  • CSS 0 0 0 0 Updated Nov 19, 2021
  • PLIGHT Public

    Privacy Leakage through Inference across Genotypic HMM Trajectories

    Python 1 GPL-3.0 0 0 0 Updated Nov 10, 2021
  • Jupyter Notebook 0 1 0 1 Updated Nov 9, 2021
  • UMG Public

    A network propagation method to prioritize long tail genes in cancer

    Python 2 MIT 0 0 0 Updated Oct 12, 2021
  • HTML 0 0 0 0 Updated Oct 11, 2021
  • C++ 6 1 0 0 Updated Sep 30, 2021

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