Gerstein Lab

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1. ThermoNet Public

   ThermoNet is a computational framework for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep…

   Python 29 8

2. MUSIC Public

   MUltiScale enrIchment Calling for ChIP-Seq Datasets

   C++ 22

3. aloft Public

   ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the human genome.

   Python 18 4

4. exceRpt Public

   Forked from rkitchen/exceRpt

   Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets

   HTML 18 6

5. SAMChain Public

   Python 17 5

6. MatchedFilter Public

   Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivity profiles

   Python 15 7