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manual changes to index
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Laurens Bossen committed Feb 20, 2012
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Expand Up @@ -58,7 +58,7 @@ <h3>Applications</h3>
evolution, and soft-condensed matter physics. The scheme presented here has
been specifically designed to simulate biochemical networks. The original
version allows the efficient simulation of signal transduction pathways and
gene regulation networks in the cytoplasm and recently we have also implemented
gene regulation networks in the cytoplasm. Recently we have also implemented
reactions at surfaces including membranes, and reactions at, and passive and
active transport along, polymers such as microtubules and DNA.</p>

Expand All @@ -85,10 +85,10 @@ <h3>Developers</h3>
Movie (<a href="/movies/12-particles_200-steps/12-particles_200-steps.ogv">ogv</a>,
<a href="/movies/12-particles_200-steps/12-particles_200-steps.mp4">mp4</a>). <em>A movie of
eGFRD in action in 3D. The large spheres and cylinders are protective domains with one or two
particles inside. The plane at the bottom represents a membrane to which particles can be bound.
The spherical protective domains model the diffusion and reaction between bulk particles. The flat
particles inside. The plane at the bottom represents a membrane to which particles can bind.
The spherical protective domains model the diffusion and reaction between particles in 3D. The flat
cylindrical protective domains are used to calculate the diffusion and reaction of particles in the membrane,
whereas the longer cylindrical protective domains are used to model the association of a bulk particle with
whereas the bigger cylindrical protective domains are used to model the association of a 3D particle with
the membrane. Note that the color red is used to denote the protective domain that will be updated next.</em></p></div></div></div>

<div style="position:relative; height: 160px;">
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