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VEP is added as alternative to ANNOVAR #26

Merged
merged 5 commits into from
Dec 7, 2023
Merged

VEP is added as alternative to ANNOVAR #26

merged 5 commits into from
Dec 7, 2023

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@kubranarci kubranarci commented Dec 6, 2023 •
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  • README updated as VEP added as an alternative to ANNOVAR

json_report parameter is added since producing json depends on ANNOVAR annotations. This needs to be fixed.
docs edited accordingly
nextflow_schema.json fixed

  • input_check is fixed]

@kubranarci kubranarci self-assigned this Dec 6, 2023
This was linked to issues Dec 6, 2023
update nextflow_schema.json #21
Closed
fix input checking #18
Closed
fix documents #19
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@kubranarci kubranarci merged commit 1829f29 into dev Dec 7, 2023
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@kubranarci kubranarci deleted the 25-alternate-annovar-with-vep branch December 7, 2023 08:10
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update nextflow_schema.json fix documents fix input checking
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