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Dev #6

Merged
merged 56 commits into from
Jun 9, 2020
Merged

Dev #6

merged 56 commits into from
Jun 9, 2020

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giannisdoukas
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@giannisdoukas
fix missing empty line
652272a
@giannisdoukas
refactor magic commands
b0ab1ad
@giannisdoukas
fix code style
6c3ee22
@giannisdoukas
store cwl in files
2c975c1
@giannisdoukas
change python versions in travis
494041c
@giannisdoukas
fix travis python version
c25613b
@giannisdoukas
visualize csv data
99c1e42
@giannisdoukas
fix test
4781863
@giannisdoukas
init docs
87fde6e
@giannisdoukas
add docs
bfac1ac
@giannisdoukas
add readthedocs config
52e1688
@giannisdoukas
fix requirements
8253627
@giannisdoukas
config the docs
d6aeb8c
@giannisdoukas
visualize data images
7c644a4
@giannisdoukas
Merge branch 'dev' into composition
fad68f6 
# Conflicts:
#	cwlkernel/CWLKernel.py
#	cwlkernel/cwlrepository/cwlrepository.py
#	examples/Compose.ipynb
#	tests/cwlrepository/test_cwlcomponent.py
#	tests/test_CWLKernel.py
@giannisdoukas
compose workflows
b8d44f7
@giannisdoukas
fix import magics in __init__.py
b0c1b4d
@giannisdoukas
rm python 3.9 because pandas is not yet supported
ef5096c
@giannisdoukas
clearnup do_execute
3d079c3
@giannisdoukas
add version
86c1d09
@giannisdoukas
init git resolver
d89774c
@giannisdoukas
fix import
6be023d
@giannisdoukas
add url join to support relative paths in steps
67c1e8c
@giannisdoukas
fix check status
13cc678
@giannisdoukas
improve error message
b592c3d
@giannisdoukas
add mockito
71c5398
@giannisdoukas
fix duplicates api calls
e504d44
@giannisdoukas
add githubImport magic
e35d7fc
@giannisdoukas
rm nested argument
07471ca
@giannisdoukas
rm workflow's outputs from git
e65bbcc
@giannisdoukas
add viewTool magic command
bae4e49
@giannisdoukas
fix issue with nested attribute
6b34e81
@giannisdoukas
fix issue in test without id
7680063
@giannisdoukas
merge git-import to dev
95e2d06
@giannisdoukas
add extra workflows in tests directory
7e3e2b3
@giannisdoukas
add composed workflow
980b0f2
@giannisdoukas
compose workflow with workflow
2af1110
@giannisdoukas
fix issue with result with same id
b8cc1df
@giannisdoukas
fix display_csv
83750a1
@giannisdoukas
add sample magic command
453cb81
@giannisdoukas
fix import
800135a
@giannisdoukas
Merge remote-tracking branch 'origin/master' into dev
4edb0bf 
# Conflicts:
#	README.md
@giannisdoukas
replace example image
81748ba
@giannisdoukas
update snippets example
865bc97
@giannisdoukas
update snippets.ipynb
f2016e5
@giannisdoukas
increase delta in sample test
0ac954a
@giannisdoukas
fix styling issues
97ac318
@giannisdoukas
replace with safe load yaml
22a5b8a
@giannisdoukas
rename id parameter
5fb086c
@giannisdoukas
rename id parameter
41e7f65
@giannisdoukas
increase test coverage
0193752
@giannisdoukas
add test for data magic command
8bd2920
@giannisdoukas
fix docs formats
7c23467
@giannisdoukas
fix issues in docs
b1f5874
@giannisdoukas
rm unused methods
38f64db
@giannisdoukas
cleanup
0fe13b0
@giannisdoukas giannisdoukas marked this pull request as ready for review June 9, 2020 17:08
@giannisdoukas giannisdoukas merged commit 27701e0 into master Jun 9, 2020
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