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Dev #6

Merged
merged 56 commits into from
Jun 9, 2020
Merged

Dev #6

merged 56 commits into from
Jun 9, 2020

Commits on May 26, 2020

  1. fix missing empty line

    @giannisdoukas
    giannisdoukas committed May 26, 2020
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Commits on May 28, 2020

  1. refactor magic commands

    @giannisdoukas
    giannisdoukas committed May 28, 2020
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  2. fix code style

    @giannisdoukas
    giannisdoukas committed May 28, 2020
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Commits on May 29, 2020

  1. store cwl in files

    @giannisdoukas
    giannisdoukas committed May 29, 2020
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  2. change python versions in travis

    @giannisdoukas
    giannisdoukas committed May 29, 2020
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  3. fix travis python version

    @giannisdoukas
    giannisdoukas committed May 29, 2020
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  4. visualize csv data

    @giannisdoukas
    giannisdoukas committed May 29, 2020
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  5. fix test

    @giannisdoukas
    giannisdoukas committed May 29, 2020
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  6. init docs

    @giannisdoukas
    giannisdoukas committed May 29, 2020
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Commits on May 30, 2020

  1. add docs

    @giannisdoukas
    giannisdoukas committed May 30, 2020
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  2. add readthedocs config

    @giannisdoukas
    giannisdoukas committed May 30, 2020
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  3. fix requirements

    @giannisdoukas
    giannisdoukas committed May 30, 2020
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  4. config the docs

    @giannisdoukas
    giannisdoukas committed May 30, 2020
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  5. visualize data images

    @giannisdoukas
    giannisdoukas committed May 30, 2020
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  6. Merge branch 'dev' into composition 

    # Conflicts:
#	cwlkernel/CWLKernel.py
#	cwlkernel/cwlrepository/cwlrepository.py
#	examples/Compose.ipynb
#	tests/cwlrepository/test_cwlcomponent.py
#	tests/test_CWLKernel.py
    @giannisdoukas
    giannisdoukas committed May 30, 2020
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Commits on May 31, 2020

  1. compose workflows

    @giannisdoukas
    giannisdoukas committed May 31, 2020
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  2. fix import magics in __init__.py

    @giannisdoukas
    giannisdoukas committed May 31, 2020
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  3. rm python 3.9 because pandas is not yet supported

    @giannisdoukas
    giannisdoukas committed May 31, 2020
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Commits on Jun 1, 2020

  1. clearnup do_execute

    @giannisdoukas
    giannisdoukas committed Jun 1, 2020
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Commits on Jun 4, 2020

  1. add version

    @giannisdoukas
    giannisdoukas committed Jun 4, 2020
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  2. init git resolver

    @giannisdoukas
    giannisdoukas committed Jun 4, 2020
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  3. fix import

    @giannisdoukas
    giannisdoukas committed Jun 4, 2020
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  4. add url join to support relative paths in steps

    @giannisdoukas
    giannisdoukas committed Jun 4, 2020
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  5. fix check status

    @giannisdoukas
    giannisdoukas committed Jun 4, 2020
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  6. improve error message

    @giannisdoukas
    giannisdoukas committed Jun 4, 2020
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Commits on Jun 5, 2020

  1. add mockito

    @giannisdoukas
    giannisdoukas committed Jun 5, 2020
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  2. fix duplicates api calls

    @giannisdoukas
    giannisdoukas committed Jun 5, 2020
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  3. add githubImport magic

    @giannisdoukas
    giannisdoukas committed Jun 5, 2020
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Commits on Jun 6, 2020

  1. rm nested argument

    @giannisdoukas
    giannisdoukas committed Jun 6, 2020
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  2. rm workflow's outputs from git

    @giannisdoukas
    giannisdoukas committed Jun 6, 2020
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  3. add viewTool magic command

    @giannisdoukas
    giannisdoukas committed Jun 6, 2020
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  4. fix issue with nested attribute

    @giannisdoukas
    giannisdoukas committed Jun 6, 2020
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  5. fix issue in test without id

    @giannisdoukas
    giannisdoukas committed Jun 6, 2020
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  6. merge git-import to dev

    @giannisdoukas
    giannisdoukas committed Jun 6, 2020
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Commits on Jun 7, 2020

  1. add extra workflows in tests directory

    @giannisdoukas
    giannisdoukas committed Jun 7, 2020
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  2. add composed workflow

    @giannisdoukas
    giannisdoukas committed Jun 7, 2020
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  3. compose workflow with workflow

    @giannisdoukas
    giannisdoukas committed Jun 7, 2020
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Commits on Jun 8, 2020

  1. fix issue with result with same id

    @giannisdoukas
    giannisdoukas committed Jun 8, 2020
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  2. fix display_csv

    @giannisdoukas
    giannisdoukas committed Jun 8, 2020
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Commits on Jun 9, 2020

  1. add sample magic command

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  2. fix import

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  3. Merge remote-tracking branch 'origin/master' into dev 

    # Conflicts:
#	README.md
    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  4. replace example image

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  5. update snippets example

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  6. update snippets.ipynb

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  7. increase delta in sample test

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  8. fix styling issues

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  9. replace with safe load yaml

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  10. rename id parameter

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  11. rename id parameter

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  12. increase test coverage

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  13. add test for data magic command

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  14. fix docs formats

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  15. fix issues in docs

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  16. rm unused methods

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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  17. cleanup

    @giannisdoukas
    giannisdoukas committed Jun 9, 2020
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