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1. HopkinsIDD/IDSpatialStats HopkinsIDD/IDSpatialStats Public

   R 6 8

2. COVID-19-Mobility-Data-Network/mobility COVID-19-Mobility-Data-Network/mobility Public

   An R package containing functions for parsing mobility data, fitting models using Bayesian inference, and simulating mobility patterns.

   R 24 3

3. HopkinsIDD/phylosamp HopkinsIDD/phylosamp Public

   The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linkage and sample size calculations for phylogenetic studies.

   R 12 2

4. hmob hmob Public

   An R package with tools for analyzing human mobility data: parsing call data records and associated metadata, visualizing trip duration data, and mobility models.

   R 1

5. WES WES Public

   WES: an R package providing methods for analyzing Wastewater and Environmental Sampling (WES) data.

   R

6. MOSAIC-docs MOSAIC-docs Public

   Documentation for the Metapopulation Outbreak Simulation with Agent-based Implementation for Cholera (MOSAIC).

   R