Changes in git history #1
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Sure, will do. Thanks @gtauzin ! |
lewtun
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Dec 20, 2019
Filter + hypothesis tests + Mapper skeleton class
ulupo
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Jan 16, 2020
* Refactoring of create_network_2d to fix (#121), (#125), (#127), (#128) - A suggestion of a template for fixing all the above issues in the static and 2d case. - Some necessary changes also performed in `utils.visualization.py` - Mapper Quickstart notebook updated to show new behaviour with a pandas dataframe example NOTE IMPORTANT: this has broken create_interactive_network, which will need to be refactored separately if these changes are accepted. Also, no change has been made to create_network_3d, pending approval for 2d. * Rename node_color argument to node_color_statistic * Refactor name of is_node_colors_ndadday to is_node_colors_ndarray * Extend functionality from 2D visualisation to 3D - Does not include the hoverlabel * Set hoverlabel background color for 3D visualisation * Fix linting in visualisation * Extend interactive visualisation to include new API * Fix linting * Add "Color by" annotation to 3D visualisation * Move viridis colorscale to top of dropdown list Since the default colorscale is viridis, it makes sense to show the user this value at the top of the dropdown * Refactor 2D and 3D networks into single function * Merge plot_options from 2D and 3D networks and remove colorscale dropdown * Merge plot and layout options from 2D and 3D plots * Change sliders for filter params to bounded boxes * Fix layout options for 2D and 3D plots * Add docstring for dim argument * Refactor case handling for 2D vs 3D plotting into single if statement * Refactor 3D if statement to single clause * Remove 2D and 3D plotting functions * Remove canonical node ID from hover text * Update init for static function * Add 3D functionality to interactive plot * Clone pipeline in static plotting * Update quickstart notebook for new API changes * Modularise case checking to helper functions * Update quickstart notebook for new API * Fix bug with layout dim refactoring * Remove unused helper function for color scales * Sort imports in visualisation.py * Add TODO comment on JIT computation for color by columns * Change name of hoverlabel text variables * Refactor name of _is_array_or_dataframe() utility function * Fix docstring to reflect change from node_colors to node_color_statistic * Fix name of attribute names in docstrings and use US english for color * Add clone_pipeline bool and remove get_figure() utility function * Migrate examples docstring to issue #152 * Refactor setting of cover parameters to be generic for ints and floats * Add string-based widget for cover * Change color_by_column default value to False * Tidy up color_variable explanation in docstrings * Update quickstart notebook to match API changes * Remove unused get_figure() helper function * Remove submit button by setting continuous_update False * Clean up commented out code from removal of submit button * Add comment about cloning pipeline * Refactor update_figure() to accept node and edge traces Saves memory by avoiding need to create a new plotly Figure object with each update * Clean up function signatures and variable names for node and edge traces * Tweak whitespace in comment * Refactor helper function to reflect changes to return * Update quickstart notebook to reflect changes * Fix docstring to remove attr * Fix docstring for color by columns dropdown default value Co-authored-by: Umberto Lupo <46537483+ulupo@users.noreply.github.com>
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Please be aware that the final moving from gitlab to github has led us to modify git history.
@rth, could you please refork?
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