Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Enumerate series in zarr metadata? #126

Closed
Tracked by #104
, #140
...
melissalinkert opened this issue Jan 14, 2022 · 0 comments · Fixed by #157
Closed
Tracked by #104
, #140
...

Enumerate series in zarr metadata? #126

melissalinkert opened this issue Jan 14, 2022 · 0 comments · Fixed by #157

Comments

@melissalinkert
Copy link
Member

@glencoesoftware team briefly discussed that it might be helpful to include series paths/indexes and names in top-level zarr metadata so that OME-XML doesn't always have to be parsed.
@joshmoore joshmoore mentioned this issue Feb 25, 2022
Open
2 tasks
@melissalinkert melissalinkert mentioned this issue Mar 15, 2022
Closed
8 tasks
melissalinkert added a commit to melissalinkert/bioformats2raw that referenced this issue Jun 4, 2022
@melissalinkert
Add group path to series index mapping in root attributes
11581a5 
Fixes glencoesoftware#126.

The root level attributes (if they are written) will now contain
a "groups" dictionary that maps each group with multiscales metadata
to the corresponding Bio-Formats series index (== Image index in METADATA.ome.xml).
@melissalinkert melissalinkert mentioned this issue Jun 4, 2022
Merged
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
Converters
Status: Done
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

Add group path to series index mapping in root attributes melissalinkert/bioformats2raw
1 participant
@melissalinkert