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Clarify column iterator usage
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getColumnIterator expects position in sequence coordinates (genome coordinates if the sequence is a genome), but ColumnIterator->toSite expects the position exclusively in genome coordinates.
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joelarmstrong committed Oct 15, 2013
1 parent b08b692 commit 3aa4d01
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion api/inc/halSegmentedSequence.h
Original file line number Diff line number Diff line change
Expand Up @@ -82,7 +82,7 @@ class SegmentedSequence
* * (note that other genomes in their spanning tree will be
* * traversed as necessary but not reported)
* @param maxInsertLength maximum insertion to be traversed
* @param position Index in genome of returned iterator
* @param position Index in sequence of returned iterator
* @param noDupes Don't follow paralogy edges
* @param noAncestors Don't report any non-leaf nodes in output
* @param reverseStrand Map from reverse strand of this sequence
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