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  • UC Santa Cruz Genomics Institute

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Achievements

Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2
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  1. ComparativeGenomicsToolkit/cactus ComparativeGenomicsToolkit/cactus Public

    Official home of genome aligner based upon notion of Cactus graphs

    C 492 108

  2. analysis-purgatory analysis-purgatory Public

    Miscellaneous analyses that weren't/aren't expected to be part of a paper, but need source control anyway

    Python

  3. glennhickey/progressiveCactus glennhickey/progressiveCactus Public

    Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules

    Python 80 26

  4. ComparativeGenomicsToolkit/hal ComparativeGenomicsToolkit/hal Public

    Hierarchical Alignment Format

    C++ 158 40

  5. vertebrate-phylogeny vertebrate-phylogeny Public

    A phylogeny of vertebrates which have genome assemblies available

    Python 2

  6. DataBiosphere/toil DataBiosphere/toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 891 240