Protein-Protein-interaction-using-Networkx

The networkx is used for analysing the interaction between small/medium-scale protein-protein. The more details about networkx can can be found here, https://networkx.github.io/documentation/stable/index.html. And, the dataset for this task is used from here, https://www.inetbio.org/wormnet/downloadnetwork.php.

In this task, the following things are implemented:

1. Build the corresponding network (G) with Networkx

2. Find number of nodes, number of edges and the average degree of the network

3. Find the density of the network.

4. Find the minimum spanning tree in G and draw it.

5. Draw the degree distribution histogram.

6. Find the largest connected component of the network (LC) and implement the tasks:

   i. Draw LC.

   ii. Find its diameter

   iii. Find center of LC

   iv. Find the number of clique communities with 3 nodes.

   v. Find the protein that chnage in its status has potentially the biggest effect on the rest of the network