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NeighborList Filters and SANN #1051

Merged
merged 78 commits into from Feb 3, 2023
Merged

NeighborList Filters and SANN #1051

merged 78 commits into from Feb 3, 2023

Commits on Sep 26, 2022

  1. start work on adding RDF normalization modes

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    tommy-waltmann committed Sep 26, 2022
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Commits on Sep 27, 2022

  1. compilation works now

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    tommy-waltmann committed Sep 27, 2022
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  2. add test for new normalization modes

    @tommy-waltmann
    tommy-waltmann committed Sep 27, 2022
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  3. update docstrings

    @tommy-waltmann
    tommy-waltmann committed Sep 27, 2022
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  4. linting

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    tommy-waltmann committed Sep 27, 2022
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  5. credits and changelog

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    tommy-waltmann committed Sep 27, 2022
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  6. cpp linting

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    tommy-waltmann committed Sep 27, 2022
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  7. fix typo

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    tommy-waltmann committed Sep 27, 2022
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  8. correct behavior

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    tommy-waltmann committed Sep 27, 2022
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Commits on Sep 29, 2022

  1. start migration guide

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    tommy-waltmann committed Sep 29, 2022
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  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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    pre-commit-ci[bot] committed Sep 29, 2022
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Commits on Oct 4, 2022

  1. update docstring for RDF class

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    tommy-waltmann committed Oct 4, 2022
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Commits on Oct 6, 2022

  1. change from inter to exact

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    tommy-waltmann committed Oct 6, 2022
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  2. Update freud/density.pyx 

    Co-authored-by: Domagoj Fijan <50439291+DomFijan@users.noreply.github.com>
    @tommy-waltmann @DomFijan
    tommy-waltmann and DomFijan committed Oct 6, 2022
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  3. Apply suggestions from code review 

    Co-authored-by: Domagoj Fijan <50439291+DomFijan@users.noreply.github.com>
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    tommy-waltmann and DomFijan committed Oct 6, 2022
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Commits on Oct 10, 2022

  1. Apply suggestions from code review 

    Co-authored-by: Vyas Ramasubramani <vramasub@umich.edu>
    @tommy-waltmann @vyasr
    tommy-waltmann and vyasr committed Oct 10, 2022
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  2. update docs for RDF module

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    tommy-waltmann committed Oct 10, 2022
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Commits on Oct 12, 2022

  1. Merge pull request #1013 from glotzerlab/normalization-mode 

    RDF Normalization Mode Argument
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    tommy-waltmann committed Oct 12, 2022
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Commits on Nov 7, 2022

  1. start of template for sann

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    tommy-waltmann committed Nov 7, 2022
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Commits on Nov 8, 2022

  1. filter compiles, but does nothing

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    tommy-waltmann committed Nov 8, 2022
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  2. add basic test

    @tommy-waltmann
    tommy-waltmann committed Nov 8, 2022
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  3. make neighbors non-optional

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    tommy-waltmann committed Nov 8, 2022
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  4. linting

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    tommy-waltmann committed Nov 8, 2022
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Commits on Nov 11, 2022

  1. merge branch master into next

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    tommy-waltmann committed Nov 11, 2022
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  2. Merge branch 'next' into feature/sann

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    tommy-waltmann committed Nov 11, 2022
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  3. Revert "Merge branch 'next' into feature/sann" 

    This reverts commit b5dc58a, reversing
changes made to 45d53a4.
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    tommy-waltmann committed Nov 11, 2022
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Commits on Nov 16, 2022

  1. add sort method to Neighborlist

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    tommy-waltmann committed Nov 16, 2022
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  2. linting

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    tommy-waltmann committed Nov 16, 2022
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  3. add to template for filter sann compute method

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    tommy-waltmann committed Nov 16, 2022
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Commits on Nov 21, 2022

  1. initial C++ implementation of SANN

    @DomFijan
    DomFijan committed Nov 21, 2022
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Commits on Nov 28, 2022

  1. started working on tests

    @DomFijan
    DomFijan committed Nov 28, 2022
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  2. simple test passes

    @tommy-waltmann
    tommy-waltmann committed Nov 28, 2022
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  3. add fcc test

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    tommy-waltmann committed Nov 28, 2022
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  4. merge branch master into feature/sann

    @tommy-waltmann
    tommy-waltmann committed Nov 28, 2022
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  5. fix bad merge from before 2.12 release

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    tommy-waltmann committed Nov 28, 2022
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  6. change space to tab

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    tommy-waltmann committed Nov 28, 2022
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Commits on Dec 5, 2022

  1. attempt at paralel sann

    @DomFijan
    DomFijan committed Dec 5, 2022
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  2. added local neighborbond vectors, compiles now

    @DomFijan
    DomFijan committed Dec 5, 2022
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Commits on Dec 7, 2022

  1. small optimizations for performance

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    tommy-waltmann committed Dec 7, 2022
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  2. linting

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    tommy-waltmann committed Dec 7, 2022
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  3. parallelize constructor

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    tommy-waltmann committed Dec 7, 2022
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Commits on Dec 8, 2022

  1. remove race condition

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    tommy-waltmann committed Dec 8, 2022
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  2. organize test infrastructure

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    tommy-waltmann committed Dec 8, 2022
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Commits on Dec 12, 2022

  1. start adding more to tests

    @tommy-waltmann
    tommy-waltmann committed Dec 12, 2022
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  2. update docs and tests

    @DomFijan
    DomFijan committed Dec 12, 2022
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Commits on Dec 15, 2022

  1. update docs

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    tommy-waltmann committed Dec 15, 2022
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  2. small tweaks to tests

    @tommy-waltmann
    tommy-waltmann committed Dec 15, 2022
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  3. add docs

    @tommy-waltmann
    tommy-waltmann committed Dec 15, 2022
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  4. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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  5. linting

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    tommy-waltmann committed Dec 15, 2022
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  6. Merge branch 'master' into feature/sann

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    tommy-waltmann committed Dec 15, 2022
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  7. more linting

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    tommy-waltmann committed Dec 15, 2022
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Commits on Jan 5, 2023

  1. Merge branch 'master' into feature/sann

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    tommy-waltmann committed Jan 5, 2023
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Commits on Jan 6, 2023

  1. Apply suggestions from code review 

    Co-authored-by: Domagoj Fijan <50439291+DomFijan@users.noreply.github.com>
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    tommy-waltmann and DomFijan committed Jan 6, 2023
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  2. add test against random system

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    tommy-waltmann committed Jan 6, 2023
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  3. add Dom and I to credits

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    tommy-waltmann committed Jan 6, 2023
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Commits on Jan 16, 2023

  1. add warning

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    tommy-waltmann committed Jan 16, 2023
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  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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Commits on Jan 17, 2023

  1. cleaner implementation of check for unfilled solid angles

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    tommy-waltmann committed Jan 17, 2023
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  2. clean up condition

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    tommy-waltmann committed Jan 17, 2023
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Commits on Jan 18, 2023

  1. added stub code for changing neighbors=None default behavior

    @tommy-waltmann
    tommy-waltmann committed Jan 18, 2023
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  2. added all_pairs nlist implementation

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    tommy-waltmann committed Jan 18, 2023
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  3. linting

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    tommy-waltmann committed Jan 18, 2023
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  4. write test for all_pairs factory method

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    tommy-waltmann committed Jan 18, 2023
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  5. linting

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    tommy-waltmann committed Jan 18, 2023
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  6. parallelize implementation

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    tommy-waltmann committed Jan 18, 2023
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  7. linting

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    tommy-waltmann committed Jan 18, 2023
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  8. added test for new default SANN behaivor

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    tommy-waltmann committed Jan 18, 2023
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Commits on Jan 19, 2023

  1. update docs

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    tommy-waltmann committed Jan 19, 2023
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Commits on Jan 26, 2023

  1. add option to print exception or warning in unfilled shell case

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    tommy-waltmann committed Jan 26, 2023
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  2. Merge branch 'master' into feature/sann

    @tommy-waltmann
    tommy-waltmann committed Jan 26, 2023
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  3. linting

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    tommy-waltmann committed Jan 26, 2023
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  4. linting

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    tommy-waltmann committed Jan 26, 2023
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Commits on Jan 28, 2023

  1. Add missing const qualifier.

    @vyasr
    vyasr committed Jan 28, 2023
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  2. Add test of error behavior.

    @vyasr
    vyasr committed Jan 28, 2023
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Commits on Jan 31, 2023

  1. fix changelog entry

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    tommy-waltmann committed Jan 31, 2023
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Commits on Feb 1, 2023

  1. Merge branch 'master' into feature/sann

    @tommy-waltmann
    tommy-waltmann committed Feb 1, 2023
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Commits on Feb 3, 2023

  1. Merge branch 'master' into feature/sann

    @tommy-waltmann
    tommy-waltmann committed Feb 3, 2023
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